3d-slicer

There are 5 repositories under 3d-slicer topic.

• Slicer / Slicer

  Multi-platform, free open source software for visualization and image computing.

  medical-imagingvtkitkpythonqtimage-processingnational-institutes-of-healthmedical-image-computingneuroimagingtractographyimage-guided-therapyregistrationsegmentation3d-printingnih3d-slicertcia-dackitwarec-plus-pluscomputed-tomography
  Language:C++ 1468

• Slicer / SlicerGitSVNArchive

  :warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

  medical-imagingvtkitkpythonqtimage-processingnational-institutes-of-healthcross-platformmedical-image-computingneuroimagingtractographyimage-guided-therapyregistrationsegmentation3d-printingnih3d-slicertcia-dackitwarec-plus-plus
  Language:C++ 874

• commontk / CTK

  A set of common support code for medical imaging, surgical navigation, and related purposes.

  c-plus-plusqtmedical-imagingpythonvtkitkdicomplugin-managerosgi3d-slicermitkopen-sourcecross-platform
  Language:C++ 790

• QIICR / dcmqi

  dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

  quantitative-imagingdicomimaging-informaticsconverterscancer-imaging-researchmedical-image-computingnci-qintcia-dacnci-itcr3d-slicer-extension3d-slicer
  Language:C++ 221

• KitwareMedical / SlicerVirtualReality

  A Slicer extension that enables user to interact with a Slicer scene using virtual reality.

  3d-slicer3d-slicer-extensioncmakekitwareopenvrvtk
  Language:C++ 105

• AIM-Harvard / SlicerRadiomics

  A Slicer extension to provide a GUI around pyradiomics

  3d-slicernciitcrquantitative-imagingnci-itcrradiomicscancerimagingclinical-research
  Language:Python 99

• revarbat / mandoline-py

  A 3D printing STL-to-GCode slicer based on the Clipper library.

  3d-slicerstl-slicer
  Language:Python 81

• NA-MIC / ProjectWeek

  Website for NA-MIC Project Weeks

  3d-slicerreproducible-researchinternational-conferencemedical-imagingopen-healthcareopen-sourcehackathon
  Language:Python 74

• SlicerDMRI / SlicerDMRI

  Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

  diffusion-mri3d-slicermedical-image-computingneuroimaging3d-slicer-extensiontractography
  Language:C++ 73

• Slicer / SlicerNotebooks

  Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

  3d-slicerjupyter-notebookbinderpython
  Language:Jupyter Notebook 66

• Slicer / ExtensionsIndex

  Slicer extensions index

  3d-slicer3d-slicer-extensioncross-platformimage-processingmedical-image-computingmedical-imagingnational-institutes-of-healthneuroimagingnihpythonqtregistrationsegmentationvtk
  Language:Python 57

• Kitware / SlicerSALT

  An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power. Altogether this constitutes a crucial resource for the imaging field that will enable many and important new findings in biomedical imaging studies.

  shape-analysiskitware3d-slicer3d-slicer-custom-application
  Language:Python 51

• Slicer / SlicerDocker

  Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.

  3d-slicer
  Language:Dockerfile 51

• KitwareMedical / SlicerCustomAppTemplate

  Template to be used as a starting point for creating a custom 3D Slicer application

  3d-slicerkitwarevtkitkmedical-image-computingimage-processingpythonregistrationsegmentationc-plus-pluscross-platform3d-slicer-custom-application
  Language:C++ 45

• Slicer / SlicerExecutionModel

  An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (CLI) modules.

  3d-slicerc-plus-pluscommand-line-parsercross-platformkitwaremedical-imaging
  Language:C++ 32

• DeepInfer / Slicer-DeepInfer

  3D Slicer Module for connecting to model repository and use models for image analysis.

  3d-slicerdeep-learningdockerimage-analysismachine-learning
  Language:Python 25

• KitwareMedical / SlicerITKUltrasound

  Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

  ultrasound3d-slicerinsight-toolkititkarfi3d-slicer-extension
  Language:C++ 21

• SenonETS / 3DSlicerTutorial_ExtensionModuleDevelopment

  SourceCode of serial tutorials on 3D Slicer extension development for beginners

  3d-slicer-extensionlaminas-api-toolslandmark-detectionlandmark-localizationlandmark-recognitionqt5qt5-guispinetutorial-sourcecodeultrasound-imagingspine-deformity3d-slicerimage-processingpythonvtk
  Language:Python 19

• QIICR / Slicer-PETDICOMExtension

  3D Slicer extension containing tools for importing DICOM PET series

  3d-slicer-extension3d-slicer
  Language:C++ 17

• SlicerProstate / SlicerProstate

  An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.

  3d-slicermedical-image-computingcancer-imagingquantitative-imaging
  Language:C++ 16

• QIICR / TCIABrowser

  3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

  nci-qintcia-dac3d-slicer3d-slicer-extension
  Language:Python 14

• Auditory-Biophysics-Lab / Slicer-BoneThicknessMapping

  3D Slicer module that creates a gradient map representing the bone thickness of a volume using VTK ray-casting.

  3d-slicer3d-slicer-extensionitkvtkmedical-image-computing
  Language:Python 13

• JoostJM / SlicerCaseIterator

  Simple Scripted Module to batch process patients in 3D Slicer

  3d-slicer3d-slicer-extension
  Language:Python 13

• QIICR / PETTumorSegmentation

  3D Slicer Extension for PETTumorSegmentation

  nci-qin3d-slicer-extension3d-slicer
  Language:C++ 13

• Slicer / vtkAddon

  General-purpose features that may be integrated into VTK library in the future.

  3d-slicerc-plus-plusvtk
  Language:C++ 10

• commontk / ctk-cli

  Python interface for inspecting and running CLI modules (as defined by CommonTK)

  3d-slicercommand-line-parsercross-platformpython
  Language:Python 9

• Slicer / SlicerBuildEnvironment

  A repository of scripts to set up a Slicer build environment.

  3d-slicerbuild-environmentdockerkitware
  Language:Dockerfile 8

• MHubAI / SlicerMRunner

  Beta Version. Browse and run all mhub models directly within 3D Slicer.

  3d-sliceraimedicinesegmentation-modelsmhub3d-slicer-extension
  Language:Python 7

• SenonETS / SlicerIGSpineDeformity

  This Module is designed for spine deformity analysis using freehand 3D ultrasound imaging, and the first module Lamina Landmark Labeling help find the Spinal Cord curve in 3D, which can be projected to three anatomical planes, e.g., for Scoliosis analysis using the Cobb angle when projected to the front back view.

  3d-slicer-extensionlandmark-classificationlandmark-detectionlandmark-localizationlandmark-recognitionqt5qt5-guispinetutorialsultrasound-imaging3d-slicermedical-imagingpythonvtk
  Language:Python 7

• afids / afids-macaca

  anatomical fiducials protocol adapted for macaques

  brainwebafidsneuroanatomynhp3d-slicer
  Language:Jupyter Notebook 6

• girder / slicer_package_manager

  REST API service and CLI built on Girder for managing Slicer application and extension packages. This site is published at slicer-packages.kitware.com and maintained by @Kitware on behalf of the 3D Slicer community.

  3d-slicergirder
  Language:Python 5

• JRHeaton / modular-klipper-config

  3D Printer Configs (Klipper/SuperSlicer)

  3d-printing3d-slicerklipperklipper-configuration
  4

• KitwareMedical / SlicerMixedReality

  A Slicer extension that enables user to interact with a Slicer scene using mixed reality headset.

  3d-slicer3d-slicer-extensioncmakekitwaremixed-realityopenxrvtk
  Language:C++ 4

• QIICR / LongitudinalPETCT

  Longitudinal PET/CT Analysis Module for Slicer 4

  3d-slicer3d-slicer-extension
  Language:C++ 4

• Slicer / DashboardScripts

  Collection of scripts used to configure/build/test/package 3D Slicer and associated extensions

  3d-slicercontinuous-integrationcross-platformkitwareopen-source
  Language:CMake 4

• Slicer / github-circleci-trigger

  A simple GitHub post-receive web hook handler able to trigger a CircleCI build.

  3d-slicercontinuous-integrationapidocs
  Language:Python 4