pathway-enrichment-analysis
There are 2 repositories under pathway-enrichment-analysis topic.
broadinstitute / ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Language:R 222- pathfindRLanguage:R 168
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sigven / oncoEnrichR
Cancer-dedicated gene set interpretation
cancerhigh-throughput-screeningtcga-datareport-generatorprotein-protein-interactionco-expressiondisease-gene-associationcrispr-targetproteinsgenesetsprioritizationprotein-complexescancer-survivalfunctional-enrichment-analysistissue-enrichment-analysispathway-enrichment-analysiscancer-hallmark-evidenceLanguage:R 48hamidghaedi / Enrichment-Analysis
From RNA-seq raw reads to enriched pathways by DEGs
dvklopfenstein / ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Language:Python 21pathwayforte / pathway-forte
A Python package for benchmarking pathway database with functional enrichment and classification methods
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AberystwythSystemsBiology / pyMEAN
A Python package for metabolite enrichment analysis.
Language:Python 8- keypathwayminer-R
biomedbigdata / keypathwayminer-R
R package for de novo pathway enrichment using KeyPathwayMiner
Language:R 4 Greco-Lab / FunMappOne
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Language:R 4hancockinformatics / pathlinkR
Analysis and visualization of RNA-Seq results
Language:R 4viktormiok / TempOseq_CarcinoChemMCF-7
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
Language:HTML 3akatrib / sys-bio
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
Language:R 2wikipathways / summit2018
WikiPathways Summit Planning
yotammarton / bioinformatics_course
GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder
Language:HTML 2c-lonergan / nmf_gsea
Thesis: Identifying significantly enriched gene sets with NMF-derived metagenes and their difference vectors
hagax8 / PathAnalyzor
Just another wrapper for pathway analysis using MAGMA
Language:Shell 1manojk-imtech / viralrep
Python and R programs used in the identification of repurposed drugs against viruses responsible for causing epidemics/pandemics
Language:Jupyter Notebook 1noobCoding / CellEnrich
Pathway enrichment analysis / visualize for Single Cell Data
Language:R 1dastagiri7 / Bioinformatics
Neuronal genes mutation interactions and analysis
Language:Jupyter Notebook 0KrajShuffle / Persister-Single-Cell-RNA-Seq-Data-Analysis
Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways
Language:R 0MolecularPathologyLab / SubtypeExploreR
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
Language:HTML 0RackS103 / Omics_Analysis_Scripts
A compilation of functions and scripts I've created to streamline analysis of phosphoproteomic data in Python!
Language:Python 0rx32940 / Norovirus_RNA_Seq
This repo contains code to pre-process, quant, and analyze RNA-Seq data obtained from human enteriod cell cultures
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raevskymichail / SIA_analysis
This repository contains primary source code for "Transcriptomic portraits and molecular pathway activation features of spinal intramedullary astrocytomas" manuscript.
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