high-throughput-screening

There are 0 repository under high-throughput-screening topic.

• sigven / oncoEnrichR

  Cancer-dedicated gene set interpretation

  cancerhigh-throughput-screeningtcga-datareport-generatorprotein-protein-interactionco-expressiondisease-gene-associationcrispr-targetproteinsgenesetsprioritizationprotein-complexescancer-survivalfunctional-enrichment-analysistissue-enrichment-analysispathway-enrichment-analysiscancer-hallmark-evidence
  Language:R 48

• Chemios / chemios

  Chemios Framework 👨🏾‍🔬: Accelerating Science through Automation

  pythonlaboratoryscienceautomationhigh-throughput-screeningpump-controlmodbusomegasyringe-pumpharvard-apparatuschemyxiot
  Language:Python 35

• NL-BioImaging / biomero

  BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

  omeroslurmbioimagingcytominefairhigh-content-screeninghigh-performance-computinghigh-throughput-screeningimage-analysisbiaflowsbiomeropython
  Language:Python 12

• LiamWilbraham / pychemlp

  Easy-to-use python module for training multi-layer perceptrons (neural networks) from molecular SMILES and known associated properties

  chemistrychemoinformaticscomputational-chemistryhigh-throughput-screening
  Language:Python 9
• Crow

  JacksonBurns / Crow

  Crow Really Outta Work - User Friendly GUI for High Throughput Experimentation Automation

  crowpeak-areasinstrumentshtehigh-throughput-screeninghigh-throughput-data-analysis
  Language:Python 5

• jrem-chem / GPCRLigNet

  Code for an artificial neural net classifier of small molecule GPCR activity

  gpcrhigh-throughput-screeningligand-screeningmachine-learning
  Language:PureBasic 4

• YoavLotem / NeuriteOutgrowth

  A tool for automatic neurite outgrowth and cell viability estimation using deep learning and graph theory.

  neuriteshigh-throughput-screeningdeep-learningnetwork-analysisdrug-discoverydrug-repurposinghigh-content-screeningcomputer-vision
  Language:Jupyter Notebook 4

• gmp007 / perovskene-materials

  Frontiers in 2D Perovskene: Tailoring ABC3 Perovskite Structures for Next-Generation Material Applications

  2d-materialsdeep-neural-networkshigh-throughput-screeningmachine-learning-algorithmsmaterial-designmultitask-learningperovskitesperovskene
  Language:Jupyter Notebook 3

• LiamWilbraham / polyhts

  High-level module for ultra-fast structural optimisation and property calculations of organic co-polymers.

  chemistrymaterial-designhigh-throughput-screening
  Language:Python 3

• NL-BioImaging / biomero-scripts

  Scripts for use with BIOMERO

  biaflowsbioimagingbiomerocytominefairhigh-throughput-screeningimage-analysisomeroslurmhigh-content-screeninghigh-performance-computing
  Language:Python 3

• zuzg / drug-screening

  💊 A project examining data from High Throughput Screening center in Poznan.

  high-throughput-screeningdrug-discovery
  Language:Jupyter Notebook 3

• gautammalik-git / AutoDock-GPU-Pipeline

  This pipeline facilitates setting up ligand docking against a protein using AutoDock-GPU. It streamlines the process of docking a ligand library onto a protein structure, leveraging the enhanced performance of AutoDock-GPU for faster results.

  dockingdrug-designhigh-throughput-screeningligand-screeningdocking-librarypipelineautodock-gpu
  Language:Python 2

• morchalabi / COMPARE-suite

  Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.

  high-throughput-screeninghigh-content-screeningflow-cytometrymass-cytometrypipelineclusteringquality-controlbias-correctionsimilarity-measuresvisualization
  Language:R 2

• ydu-sci / Binding_Curve_Viewer

  Visualizing the Equilibrium and Kinetics of Protein-Ligand Binding and Competitive Binding

  binding-curveequilibriumic50kdkikineticsprotein-ligand-bindingvisualizationcompetitive-bindingligand-binding-assayhigh-throughput-screening
  Language:Python 2

• benedictsaunders / polyHTS2

  chemoinformaticspolymerxtbsqlite3high-throughput-screeningchemistrycomputational-chemistryconformer-search
  Language:Python 1

• cectri / Quantification-of-microbial-robustness

  R Scripts for quantification of microbial robustness from high-throughput screenings

  robustnessbioprocessyeastperformancevariancehigh-throughput-screeningchalmersindbior-programmingtidyverse
  1
• ScreenR

  EmanuelSoda / ScreenR

  An R package that enables the user to perform High Throughput Biological Screening.

  high-throughput-screening
  Language:R 1

• GoranTomacruz / CIPHERCatLib

  Catalyst Library for Material Discovery Studies, including Transition Metal and Transition Metal Derivatives. Materials are compiled from online open-source databases, as well as own calculations. A GUI is included for convenient input file generation. Please expect this to be updated regularly.

  computational-modelingdensity-functional-theoryhigh-throughput-screening
  Language:Python 1

• kjappelbaum / structure_comp

  Python package for removal of duplicates in (solid state) structural databases

  materials-sciencematerials-informaticshigh-throughput-screening
  Language:Python 1
• HoloScreen-onco

  Anivader / HoloScreen-onco

  High-throughput detection and enumeration of tumor cells in blood using Digital Holographic Microscopy (DHM) and Deep Learning.

  3d-imagingcancer-researchcomputational-imagingconvolutional-neural-networksdeep-learningdigital-holographic-microscopyfluorescence-microscopy-imaginghigh-throughput-screeningimage-analysisimage-classificationmatlabmicrofluidicsshallow-neural-networktransfer-learningautomationend-to-end
  Language:MATLAB 0

• cectri / Robustness_Trade-offs

  Performance and Robustness trade-offs in yeast - analysis of phenotypic data from 24 Saccharomyces cerevisiae strains grown in 29 conditions

  bioprocessbioethanolhigh-throughput-screeningsaccharomyces-cerevisiaeyeast-datasetlignocellulosic-hydrolisatesmicrobial-robustness
  0

• lhartmanis / compound-screen

  Code and analysis scripts for analyzing newly transcribed RNA in large-scale compound screen experiments

  gene-expression-analysishigh-throughput-screening
  Language:Python 0

• mukherjeevaskar267 / CRISPRi_Screening_AceticAcid

  Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

  phenomicshigh-throughput-screeningscan-o-maticbioscreenessential-genessaccharomyces-cerevisiaeacetic-acidstress-tolerancecrispriyeast
  Language:R 0
• lidetector

  sauriiiin / lidetector

  LI Detector analytical pipeline for colony-based high-throughput screens.

  phenomicscolony-sizesphenotypinghigh-throughputhigh-throughput-screeningmicrobiologyadaptivebeneficial
  Language:MATLAB 0

• sauriiiin / sau-matlab-toolkit

  Sau's implementation of the MATLAB Colony Analyzer Toolkit and Bean MATLAB Toolkit to analyze high-throughput screening data.

  matlabmatlab-toolboxhigh-throughput-screeningbioinformaticsbioinformatics-pipelinephenotypingscience
  Language:MATLAB 0

• scbirlab / hts-tools

  🏮 Parsing and analysing platereader absorbance and fluorescence data.

  assay-analysisdata-analysisfluorescencehigh-throughputhigh-throughput-screeningplatereader
  Language:Python 0

• StructuralGenomicsConsortium / CNP17-DENVRdrp-EnamineCovalent

  An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the Enamine covalent library

  drug-discoveryhigh-throughput-screeningmedicinal-chemistrycovalent-drug
  0

• StructuralGenomicsConsortium / CNP19-CHIKVhelicase-Covalent

  An SGC Open Chemistry Networks Project (number 19) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Enamine Covalent library.

  drug-discoveryhigh-throughput-screeningmedicinal-chemistry
  0

• StructuralGenomicsConsortium / CNP21-CHIKVhelicase-Asinex

  An SGC Open Chemistry Networks Project (number 21) dedicated to finding hits vs CHIKV nsp2 helicase based on a HTS of a Asinex library.

  drug-discoveryhigh-throughput-screeningmedicinal-chemistry
  0

• biobricks-ai / tox21

  Tox21 quantitative high throughput screening (qHTS) 10K library data

  comptoxepahigh-throughput-screeningtox21brick
  Language:Clojure

• biobricks-ai / toxcast

  EPA data on 1,800 chemicals across 700+ assay endpoints

  computational-toxicologyepahigh-throughput-screeningtox21brick
  Language:R

• kiranvad / MLCD

  Metric Learning for Combinatorial Datasets

  combinatorial-datasetshigh-throughput-screeningmaterial-informaticsmetric-learningmt-lmnn
  Language:MATLAB

• oist / topcorneR

  Plan and analyse large-scale liquid transfers

  rhigh-throughput-screeningliquid-handling
  Language:R

• Raman1121 / OUR-2018

  This repository contains the files created and used for the Opportunities for Undergraduate Research Program, 2018.

  capsule-networkscheminformaticsdeep-learningmachine-learningundergraduate-researchhigh-throughput-screeningdrug-designsvm-classifierknn-classifier
  Language:Jupyter Notebook

• rbBosshard / pytcpl

  pytcpl is a streamlined Python package that incorporates the levels 4 to 6 of tcpl+tcplFit2, providing concentration-response curve fitting and hit-calling. It utilizes the Invitrodb version 4.1 release (September 21, 2023) as backend database.

  cheminformaticsconcentration-response-analysiscurve-fittinghigh-throughput-screeninghtsinvitro
  Language:HTML

• StructuralGenomicsConsortium / CNP11-DENVRdrp-LifeChem

  An SGC Chemical Networks Project devoted to the DENV Rdrp, focusing specifically on exploring the LifeChemicals library

  drug-discoveryhigh-throughput-screeningmedicinal-chemistry