clinical-research
There are 5 repositories under clinical-research topic.
- PyHealth
sunlabuiuc / PyHealth
A Deep Learning Python Toolkit for Healthcare Applications.
Language:Python 880 cqframework / clinical_quality_language
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
Language:Java 243tompollard / tableone
Create "Table 1" for research papers in Python
Language:Python 155ncbi-nlp / NegBio
:newspaper: High-performance tool for negation and uncertainty detection in radiology reports
Language:Python 154ClarityNLP / ClarityNLP
An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
Language:Jupyter Notebook 105AIM-Harvard / SlicerRadiomics
A Slicer extension to provide a GUI around pyradiomics
Language:Python 99futianfan / clinical-trial-outcome-prediction
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
Language:Python 84VectorInstitute / cyclops
Toolkit for health AI implementation
Language:Python 66phoenixctms / ctsms
Phoenix CTMS - the ultimative CTMS/PRS/CDMS.
Language:Java 51- Language:R 39
jojojaeger / whisper-streamlit
this master thesis project is based on OpenAI Whisper with the goal to transcibe interviews
Language:Python 32sebastianarnold / WikiSection
Dataset for Coherent Topic Segmentation and Classification
KUL-Radneuron / KUL_VBG
A workflow to allow Freesurfer recon-all to run on brain image with gliomas
Language:Shell 27- Language:Shell 26
- Language:R 24
cmkobel / assemblycomparator2
🦠📇 Compare prokaryotic genomic assemblies
Language:Dockerfile 23NLPReViz / emr-vis-web
An Interactive Tool for Natural Language Processing on Clinical Text
Language:JavaScript 22- Language:JavaScript 20
nerajbobra / sepsis-prediction
Sepsis Prediction using Clinical Data (PhysioNet Computing in Cardiology Challenge 2019)
Language:Jupyter Notebook 18- ICD_GEMs.jl
JuliaHealth / ICD_GEMs.jl
ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
Language:Julia 15 KatjaGlassConsulting / reindeer
Reindeer - Result Render tool for SAS outputs
Language:Rich Text Format 14An Interactive Tool for Natural Language Processing on Clinical Text
Language:Java 14jmangori / CDISC-ODM-XML-CRF-SDTM-Annotations
Display a SDTM annotated CRF from an ODM-xml file
Language:XSLT 13- Language:Python 12
erikvw / django-collect-offline
Deploy a Django app as a client on a laptop that is offline and securely sync the data with your server when you get back online.
Language:Python 10curedao / health-reference-data
Standard health reference databases including units of measurement, biomarkers, medical codes, medications, side-effects, supplements, foods, ingredients, and more.
Language:HTML 9- Language:TeX 9
De-identifying CDISC SDTM data by Phuse rules using SAS
Language:SAS 9ComputationalHealth / TrialChain
TrialChain is a blockchain implementation to track and validate data assets captured for clinical research and clinical trials.
Language:Python 8SAS XMLMAP to convert Define-xml and ODM-XML to SAS datasets
- Language:Python 7
- Flask-Angular-Web-Application
gtancev / Flask-Angular-Web-Application
Deploying a machine learning model to Heroku.
Language:TypeScript 6 ambition-trial / ambition-edc
(P.I. Joe Jarvis) High Dose AMBISOME on a Fluconazole Backbone for Cryptococcal Meningitis Induction Therapy in sub-Saharan Africa: A Phase 3 Randomised Controlled Non-Inferiority Trial
Language:Python 5kumc-bmi / naaccr-tumor-data
using NAACCR tumor registry data in i2b2, PCORNet CDM
Language:Python 5Sage-Bionetworks / mPower-2-Android
Parkinson's disease clinical study app
Language:Java 5
