gff
There are 0 repository under gff topic.
- Language:Perl 411
- pyGenomeViz
moshi4 / pyGenomeViz
A genome visualization python package for comparative genomics
Language:Python 230 - Language:Ruby 89
- Language:Clojure 88
- Language:Python 85
wrf / genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
Language:Python 63- Language:Nim 58
- Language:Python 44
baoxingsong / GEAN
This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
Language:C++ 41ginkgobioworks / edge
Efficiently keep track of changes to genomes
Language:Python 38bpucker / RNA-Seq_analysis
scripts for RNA-Seq analysis
Language:Python 24- Language:Python 18
NCBI-Hackathons / Master_gff3_parser
Convert sequence IDs between ucsc/refseq/genbank
Language:Python 16NickJD / StORF-Reporter
Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)
Language:Python 15alejandrogzi / gxf2bed
Fastest GTF/GFF-to-BED converter chilling around
Language:Rust 14- Language:Jupyter Notebook 13
chasewnelson / EBT
Evolutionary Bioinformatics Toolkit (EBT)
Language:Perl 10tdseher / addtag-project
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Language:Python 10acsamson / ImageFusion-Algorithm
ImageFusion algorithm, SSIM and PSNR evaluation（常见图像融合算法以及SSIM和PSNR评价
Language:MATLAB 9biomadeira / BioDownloader
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
Language:Python 9LBGC-CFB / SpliceLauncher
RNAseq pipeline for alternative splicing junctions
Language:R 9- nwn-lib-dLanguage:D 7
fmalmeida / gff-toolbox
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
Language:Python 7biodatamodels / gff-schema
LinkML schema for GFF3, the Genome Feature Format
Language:Python 6NAL-i5K / AgBioData_GFF3_recommendation
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
- Language:Shell 4
GTF/GFF per gene non-overlapping exon length calculator
Language:Rust 3findell666 / nwn-3t-items
A python code to display Player Character (PC) items from a NWN BIC file, to a CSV file. This is meant to be used with ThreeTowns server items (custom 2da files)
Language:Python 3ProgrammingLife2017 / DynamiteAndButterflies
Genome parser and visualisation
Language:Java 3aniketk21 / tfbs-prediction
Predicting Transcription Factor Binding Sites from ENCODE data using Machine Learning
Language:Python 2corwur / gfftoneo4j
Tools for importing GFF files to a Neo4J graph database
Language:Scala 2- Language:Python 2
- Language:Python 2
- Language:Python 1
raymondkiu / 16S_extraction_Barrnap
Automated 16S sequence extraction using Barrnap output gff files
Language:Shell 1SouthGreenPlatform / AgroLD_ETL
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources and ontologies. AgroLD ETL is the Python packages developed to transform plant datasets in RDF. Packages are developped for data standards such as GFF,GAF, VCF and specific plant databases.
Language:Python 1
