NBIS - National Bioinformatics Infrastructure Sweden

AGAT

Another Gtf/Gff Analysis Toolkit

aMeta

Ancient microbiome snakemake workflow

workshop-epigenomics-RTDs

workshop website on readthedocs

workshop-mlbiostatistics

Earth-Biogenome-Project-pilot

Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

fungal-trans

A Snakemake workflow for fungal metatranscriptomics

sda-cli

User command line interface for the SDA

data-submission-documentation

Documentation for data submissions from life science research in public repositories

Training-Tech-shorts

Short lessons, training various technologies useful to our work.

cytomine-bp-helm

Helm charts for deploying cytomine (https://doc.cytomine.org/) to a kubernetes environment.

CMK-NBIS-PRT-project-template

NBIS peer review track project template

ejprd

predictprotein-webserver-topcons2

web-server implementation for topcons2

sda-services-backup

theherdbook

The Herd Book

libpredweb

Library for prediction web-server

urdr

Timelogging system of NBIS

beacon2-ri-api

Beacon v2 Reference Implementation (API)

bp-landing-pages

Bigpicture project dataset landing page generator

ejprd-data

homo-horreum

htsget-rs-helm

This repository hosts Helm charts for deploying the rust implementation of htsget

module-data-publication-dm-practices

module-dmp-dm-practices

nbis-webapp

Hosting service for NBIS web applications during development

nf-core-ameta

An nf-core compliant version of aMeta; An ancient metagenomic profiling Snakemake workflow

predictprotein-webserver-common-backend

A generic backend framwork for sequence prediction web-servers using WSDL API

sda-uppmax-integration

strobealign-evaluation

teaching_literature_club

NBIS' teaching literature club