genomics-visualization

There are 15 repositories under genomics-visualization topic.

• pyCirclize

  moshi4 / pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  bioinformaticschord-diagramcircoscomparative-genomicsdata-visualizationdatavizgenomicsgenomics-visualizationmatplotlibmicrobial-genomicsphylogenetic-treespythonradar-chartvisualization
  Language:Python 622

• thackl / gggenomes

  A grammar of graphics for comparative genomics

  comparative-genomicsggplot2biological-dataggplot-extensiongenomics-visualization
  Language:R 554

• bernatgel / karyoploteR

  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

  bioconductorgenomerstatsdata-visualizationplotting-in-rgenomics-visualizationbioinformatics
  Language:R 287

• wurmlab / sequenceserver

  Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

  blastbioinformaticssequencinggenomics-visualizationgenomicsvisualizationsequence-alignmenthacktoberfestrubyjavascript
  Language:JavaScript 265
• pyGenomeViz

  moshi4 / pyGenomeViz

  A genome visualization python package for comparative genomics

  bioinformaticscomparative-genomicsmatplotlibmicrobial-genomicsgenomicsgenomics-visualizationgenbankpythonvisualizationsyntenymicrobiologygffgff3
  Language:Python 230

• ucscGenomeBrowser / kent

  UCSC Genome Browser source tree. Stable branch: "beta".

  genomics-visualizationdata-visualisationbioinformaticscomputational-biology
  Language:C 207
• mixOmics

  mixOmicsTeam / mixOmics

  Development repository for the Bioconductor package 'mixOmics '

  rr-packagerstatsrstats-packager-projectr-pkgbioconductorgenomicsgenomics-visualizationgenomics-dataomicsmultivariate-analysismultivariate-statistics
  Language:R 140

• Zhong-Lab-UCSD / Genomic-Interactive-Visualization-Engine

  Genomic Interactive Visualization Engine

  genomics-visualizationjavascriptepigenetic-datagenomic-interactions
  Language:JavaScript 140

• stevekm / IGV-snapshot-automator

  Script to automatically create and run IGV snapshot batchscripts

  genomicsgenomics-visualizationigv
  Language:Python 134

• brentp / jigv

  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

  genomicsgenomics-visualization
  Language:Nim 121

• bigomics / omicsplayground

  Visual self-service analytics platform for big omics data.

  genomicsgenomics-visualizationomicsrna-seqrna-seq-analysis
  Language:R 114

• RCollins13 / HumanIdiogramLibrary

  Resource of human chromosome schematics & images

  geneticsgenomicsgenomics-visualizationdata-visualizationresources
  84
• MicrobeTrace

  CDCgov / MicrobeTrace

  The Visualization Multitool for Molecular Epidemiology and Bioinformatics

  bioinformaticsepidemiologynetwork-visualizationhivcdcpathogensphylogeneticsphylogenetic-treesphylogenyphylogenomicsgenomicsgenomics-visualizationgenomic-data-analysissequence-alignment
  Language:TypeScript 83

• robotoD / GenoVi

  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea

  bioinformatics-visualizationvisualization-toolsgenomics-visualization
  Language:Python 63

• thierrygosselin / radiator

  RADseq Data Exploration, Manipulation and Visualization using R

  radseqradseq-dataimputationgenotype-likelihoodsfiltergeneticsmissingnessoutliersgenomicsgenomic-data-analysisgenomics-visualizationgbsgenotyping-by-sequencingvisualizationoutliers-detectionheterozygosityparalogsartifacts-detectionbatch-effectsnormalization
  Language:HTML 57
• ezancestry

  arvkevi / ezancestry

  Easy genetic ancestry predictions in Python

  genomicsgenomics-visualizationpersonal-genomicsstreamlitdata-visualizationdimensionality-reductionancestrygenotypes
  Language:Jupyter Notebook 56
• covviz

  brwnj / covviz

  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata

  coveragegenomics-visualizationnextflow
  Language:HTML 56

• daler / trackhub

  create, manage, and upload track hubs for use in the UCSC genome browser

  genomics-visualizationpython
  Language:Python 51

• brentp / seqcover

  seqcover allows users to view coverage for hundreds of genes and dozens of samples

  hacktoberfestgenomicsgenomics-visualization
  Language:Nim 49

• LyonsLab / coge

  CoGe (Comparative Genomics) Platform

  bioinformaticscogecomparative-genomicsgenomicsgenomics-visualizationperlpythonrna-seqsynteny
  Language:Perl 44
• MGCplotter

  moshi4 / MGCplotter

  Microbial Genome Circular plotting tool for comparative genomics using Circos

  bioinformaticspythoncomparative-genomicsvisualizationcircosmicrobial-genomicsmolecular-evolutioncomparative-analysisgenomicsgenomics-visualization
  Language:Python 33

• gtrichard / deepStats

  deepStats: a stastitical toolbox for deeptools and genomic signals

  deeptoolsgalaxygenomic-signalsgenomicsgenomics-visualizationbootstrapvizualize-datastatistical-analysisdatavizsequencingchip-seqatac-seqdnase-seqrna-seqmnase-seq
  Language:R 31

• euxhenh / cellar

  Interactive software tool for the assignment of cell types in single-cell studies.

  pythonguigenomicsgenomics-visualizationclusteringsinglecellsc-rna-seqsc-atac-seqcodexspatial-transcriptomics
  Language:Python 30

• G3viz / g3viz

  Lollipop-diagram to interactively visualize genetic mutations

  genomics-visualizationvariantsvisualize-mutation-datalollipop-plotbioinformatics
  Language:JavaScript 30

• thierrygosselin / stackr

  stackr: an R package to run stacks software pipeline

  filtergbsgeneticsgenomic-data-analysisgenomicsgenomics-visualizationgenotype-likelihoodsgenotyping-by-sequencingradradseqradseq-datastackr
  Language:R 26

• GMOD / jbrowse-jupyter

  A python package for showing JBrowse views

  jupyterpythongenomics-visualizationgenomegenome-browserjbrowse
  Language:Python 23

• hw538 / cfDNAPro

  cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

  cell-free-dnagenomics-visualizationswgswhole-genome-sequencingliquid-biopsycancer-genomicscancer-researchearly-detectionbioinformaticsr
  Language:R 22

• moshi4 / plot_genome_align_fig

  Plot genome alignment figure using progressiveMauve & genoPlotR

  comparative-genomicsgenomicsgenomics-visualizationgenoplotrr
  Language:Python 21

• s1monj / nft-peppers

  Generative Art NFTs from Genomic Data

  cytoscapejsanimejsgenomics-visualizationgenomics-datajavascript
  Language:JavaScript 20
• BLSS

  Binomica-Labs / BLSS

  A suite of unique bioinformatics tools for the brave explorer.

  bioinformaticsgenomicsgenomics-visualizationbioinformatics-pipelineprotein-sequencesdnadna-sequences
  Language:C# 19

• G3viz / g3lollipop.js

  Lollipop-diagram to visualize genomic mutations

  genomics-visualizationvariantsvisualize-mutation-datalollipop-plotbioinformatics
  Language:JavaScript 19
• GBKviz

  moshi4 / GBKviz

  Easy-to-use web application for visualization and comparison of genomes in Genbank file

  bioinformaticsgenomicsgenomics-visualizationgenbankcomparative-genomicswebappstreamlitbiopythonpythonmicrobial-genomicsvisualization
  Language:Python 19

• czheluo / Circos-Pipeline

  circos pipeline

  circos-graphsdata-visualizationgenomics-visualization
  Language:Perl 18

• nf-core / hgtseq

  A pipeline to investigate horizontal gene transfer from NGS data

  nextflownf-corepipelineworkflowhorizontal-gene-transferngstaxonomiesbwa-membwa-mem2fastqcgenomics-visualizationggbiokraken2kronamultiqcsamtoolstidyverse
  Language:Nextflow 18

• outbreak-info / R-outbreak-info

  R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

  rstatsrstats-packageepidemiologygenomicsgenomics-visualizationgenomics-data
  Language:R 18

• w-gao / pgv

  A web-based, interactive pangenome visualization tool

  bioinformaticsgenomicsgenomics-visualizationvariation-graph
  Language:TypeScript 17