baoxingsong

AnchorWave

sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

GEAN

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

dCNS

conserved non-coding sequence

genomeAlignment

Compare different genome alignment tools using a wide range of genomes with different complexities.

GWAS

The scripts I used for GWAS analysis.

Irisas

Integrated region-based variants synchronization and Annotation for different inbreeding lines

mlmm

multiallelic linear mixed model

quota_Anchor

Strand and WGD aware syntenic gene identification

AnchorWave-MSA

baoxingsong.github.io

personal website

GAPIT3

Genome Association Predict Integrate Tools

MetaSee

An Interactive and Extendable Visualization Toolbox for Metagenomic Sample Analysis and Comparison

The-second-hackation

The second hackathon at PKU-IAAS

The-third-hackation

The third hackathon at PKU-IAAS

Baoxing-s-CV

Baoxing's CV

bioconda-recipes

Conda recipes for the bioconda channel.

CNSpublication

Home made source code used for Andropogoneae CNS analysis

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Meta-Mesh

Meta-Mesh: metagenomic data analysis system

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

mixmogam

Mixed Model Package For Genome-wide association mapping.

MSA2pi

caculate pi value from multiple sequence alignment fasta file

mtmm

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

myBioUtil

My scripts

parallelBlast

ppipp

PPIPP: an online protein-protein interaction network prediction and analysis platform

PROPERseqTools

STSGP

Sequence-to-sequence gene structure predication

The-first-hackation-In-the-lab

WSA

sequence alignment