fmalmeida

bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

MpGAP

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

ngs-preprocess

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

easy_circos

easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.

gff-toolbox

Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.

plot_nucmer

A simple script to run an alignment with nucmer and visualise its results.

pythonScripts

Repository to store my Python Scripts

rscripts

my_gifs

A repo to make my gifs acessible everywhere

sourmash-nf

Nextflow pipeline to run sourmash on input genomes

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

custom_envs

saving some useful and fancy custom envs

falmeida-x-meeting-2021

slides from x-meeting presentation

fma_gh_actions

fmalmeida

genomeGTFtools

convert various features into a GFF-like file for use in genome browsers

github-readme-stats

:zap: Dynamically generated stats for your github readmes

minicurso_bioinfo_semabio_XX_UnB

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-training-advanced

Customer workshop materials

test_datasets

Small test datasets for my pipelines