orfs

There are 0 repository under orfs topic.

• xryanglab / RiboCode

  release version

  bioinformaticsribosome-profilingorfspeptides
  Language:Python 54

• zhpn1024 / ribotish

  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

  bioinformaticsribosome-profilingorfstranslation-initiation-siteriboseqbam-files
  Language:Python 43

• sestaton / HMMER2GO

  Annotate DNA sequences for Gene Ontology terms

  hmmergeneorfsgene-annotation
  Language:Perl 42
• ribotricer

  smithlabcode / ribotricer

  A tool for accurately detecting actively translating ORFs from Ribo-seq data

  orfstranslationribosome-profilingtranslation-regulationbioinformaticsribosomeribo-seqribosome-profiling-data
  Language:Python 39

• NickJD / StORF-Reporter

  Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named StORFs (Stop - Open Reading Frames)

  genomesgfffastaorfs
  Language:Python 16

• mtisza1 / Cenote-Taker

  DEPRECATED: Use Cenote-Taker 3 instead

  blastcircledeprecated-repogenbankgenomegenome-annotationhhblitsmetagenomicsorfsplasmidtaxonomyvirus
  Language:Shell 14

• CalumRaine / orfOS

  An assembly language operating system for the Raspberry Pi Zero to identify genes in a DNA sequence.

  open-reading-frameorfsassemblyassembly-language-programmingassembly-languagearmraspberry-piraspberry-pi-zerooperating-systemosembedded-systemsbare-metaldnadna-sequencesfastageneticsbiologybioinformaticsbioinformatics-tool
  Language:Assembly 1

• duartebred / Algoritmos-Analise-Sequencias-Biologicas

  Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.

  alignment-algorithmblastdynamic-programmingmotifsneedleman-wunsch-algorithmorfsphylogenetic-analysisrecursion-algorithmstring-manipulationtranslation
  Language:Jupyter Notebook 1

• JakobFinci / viral-protein-analyzer

  A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

  covidsars-cov-2sarscovid-19covid19covid19-datafastaproteinblastproteinsorforfsgenomegenome-analysisproteinpythongenome-mappingdata-analysisprotein-encoding
  Language:Jupyter Notebook 1

• victoria-r / BioPython

  A collection of various biopython scripts.

  bioinformaticsbiopythonfastakmersorfspython3genbanktranscriptiontranslation
  Language:Python 1

• peter2233finn / ORF-finder-bioinfomatics

  This code is not working perfectly as it prints out the incorrect frame numbers. However it is a good starting point for anyone doing a project. Feel free to fork or commit.

  bioinformaticsorfsorforf-detection
  Language:Python