mvinyard

Michael Vinyard's repositories

torch-adata

Create PyTorch Datasets from AnnData

Language:Jupyter NotebookAGPL-3.021 2 2

ArchR-h5ad

Parse ArchR arrow files to anndata h5ad

Language:PythonMIT11 1 2

lightning-tutorial

PyTorch-Lightning Tutorial

Language:Jupyter NotebookMIT9 10

Cell-Dynamics-Seminar

An introduction and overview of cell dynamics analyses for the CCB Skills Seminar

Language:PythonMIT2 1 1

GTFast

Lift annotations from a GTF file to an adata object.

Language:PythonMIT2 10

ann_nmf

AnnData wrapper of the ARD-NMF module from SignatureAnalyzer

Language:Jupyter NotebookMIT1 1 4

annoyance

AnnData-compatible wrapper of Spotify's annoy library.

Language:PythonMIT1 10

cell-tools

Single-Cell Data Analysis Tools

Language:PythonMIT1 10

mvinyard

PhD Student @ Harvard University

1 10

AnnDataQuery

Fetch and format data matrices from AnnData

Language:Jupyter NotebookMIT01 2

torch-nets

Compose PyTorch Neural Networks

Language:PythonAGPL-3.0020

ABCParse

A better base class that handles parsing local arguments.

Language:JavaScriptAGPL-3.001 3

autodevice

Automatically assign devices in-line with pytorch code

Language:PythonMIT010

brownian-diffuser

Forward integrate torch neural networks

Language:PythonMIT010

cell-ann

Cell approximate nearest neighbors (ANN)

Language:PythonMIT01 1

cell-neighbors

Neighbor graphs for single-cell data (AnnData)

Language:Python010

cellplots

Plotting assistant and resources

Language:PythonMIT01 1

flexinet

flexinet: flexible torch neural network composition

Language:PythonMIT010

genomeIO

Genomics-catered read / write functions

Language:PythonMIT010

keops

KErnel OPerationS, on CPUs and GPUs, with autodiff and without memory overflows

Language:PythonMIT000

licorice

A python utility library for creating and printing more elegant strings.

Language:PythonMIT010

neural-diffeqs

Instantiate neural differential equations with ease

Language:PythonAGPL-3.0000

pool-sharq

Python wrapper for the Broad Institute GPP's poolq software

Language:PythonMIT010

py-pkg-logging

pypkg-logging

Language:Python000

pyLaCroix

A python color palette for those that love sparkled beverages.

Language:PythonMIT010

python-developer-kit

Python nuts and bolts

Language:PythonMIT010

seq-toolkit

Basic functions for genomic sequence manipulation

Language:PythonMIT01 3

sglib

guideID: python tools to find PAM sequences

Language:PythonMIT010

vinplots

Michael E. Vinyard's python plotting assistant

Language:PythonMIT010

WebFiles

Download files hosted on the internet and parse with python

Language:PythonMIT010