gfa

There are 0 repository under gfa topic.

• GFA-spec / GFA-spec

  Graphical Fragment Assembly (GFA) Format Specification

  graphgfaassemblyspecificationfile-format
  Language:Makefile 185

• ggonnella / gfapy

  Gfapy: a flexible and extensible software library for handling sequence graphs in Python

  bioinformaticsgfagraphssequence-analysisassembly
  Language:Python 64
• zplgfa

  SimonWaldherr / zplgfa

  #Golang package and cli tool for converting to #ZPL (from PNG, JPEG and GIF) for @ZebraTechnology-printers

  zplzpl2zpl-programming-languagezebrazebra-printerzebra-label-printersimagegfagrfgolanghacktoberfest-acceptedlabeling-toollabel
  Language:Go 63
• panacus

  marschall-lab / panacus

  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs

  gfapangenomicspangenome-growthgraphpangenomepangenome-graph
  Language:Rust 62

• edawson / gfakluge

  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

  gfagraph-representationparsinggenomics
  Language:C++ 50

• jasperlinthorst / reveal

  Graph based multi genome aligner

  gfagraphalignmentgenomeassemblyrevealmultiple-sequence-alignment
  Language:Python 43
• GFAffix

  marschall-lab / GFAffix

  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.

  gfahandlegraphpangenomics
  Language:Rust 32
• pollen

  cucapra / pollen

  generating hardware accelerators for pangenomic graph queries

  bioinformaticsgfapangenomics
  Language:Python 24

• edawson / svaha2

  Linear-time, low-memory construction of variation graphs

  genomicsgenome-graphgfavariation-graphstructural-variation
  Language:C++ 18

• miikanissi / zebrafy

  Python library for converting PDF and images to and from Zebra Programming Language (ZPL).

  pythonzebra-printerzebra-programming-languagezplzpl-programming-languagegfapdf-converter
  Language:Python 18

• Flavia95 / VGpop

  Population genetics analysis on VG

  odgigraphsgfa
  Language:Python 16

• HopedWall / rs-gfatovcf

  Rust implementation of Flavia95's GFAtoVCF

  variation-graphsgfavcf
  Language:Rust 16

• edawson / svaha

  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]

  gfavcfgraphvariation-graph
  Language:C++ 11

• pangenome / spodgi

  RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

  sparqlvariation-graphsrdflibodgigfa
  Language:Python 11

• nguyetdang / BioGraph.jl

  A Julia package for handle genome graph in the GFA format.

  bioinformaticsgraph-genomegenomegfa
  Language:Julia 10

• will-rowe / gfa

  A Go library for working with Graphical Fragment Assembly format

  gfagraphical-fragment-assemblyvariation-graph
  Language:Go 6

• AndreaGuarracino / rs-spodgi

  Line-by-line converter from GFA to RDF (turtle)

  bioinformaticsgfavariationgraphs
  Language:Rust 3

• ProgrammingLife2017 / DynamiteAndButterflies

  Genome parser and visualisation

  genome-parsergraphdnagfagffvisualisation
  Language:Java 3

• DrStiev / rs-handlegfa

  gfahashgraph
  Language:Rust 1

• heringerp / oxiqle

  SPARQL endpoint to represent pangenomic data

  gfahandlegraphoxigraphpangenomesparqlvariation-graphs
  Language:HTML 1

• roh6608 / gliderScore

  A repository for scoring gliding competitions, that aims to be efficient and accurate.

  soaringgfaigcigc-filesigc-parserfaiscoringglidinggliding-and-soaring
  Language:Go 0

• Brown-University-Library / OLD-ARCHIVED_easyscan

  Web-app that handles submitting scan-requests to the Annex.

  annexgfadjangoscan-request
  Language:Python