biomadeira

pycoevol

A Python workflow to study protein-protein coevolution and interaction

biomadeira.github.io

👨‍💻 Personal homepage

BioDownloader

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

pyPDBeREST

A python wrapper for the PDBe REST API

resume

Personal resume

CodeReview

Python example program for Code Review (13.11.14)

cli-rules

Recommendations for building usable command-line interfaces

biomadeira

book-experiment

Experimental book using bookdown

build-your-own-x

🤓 Build your own (insert technology here)

citation-network-explorer

Tool for exploring local citation networks.

dockerfiles

Docker Tools and Workflows

auto-traveler

Visualise RNA secondary structure using standard layouts

bioconda-recipes

Conda recipes for the bioconda channel.

containers

Bioinformatics containers

containers-rules-manuscript

Recommendations to contenarized your bioinformatics software

EBI-nextflow-config

EBI-wide Nextflow config file

ebi-webservices-notebooks

Training material used in some EMBL-EBI courses

edu

BioContainers Documentation.

gae_bib2yaml

Python code deployed to GAE

gae_papersetal

Python code deployed to GAE

gae_pubmed2rss

Python code deployed to GAE

homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

homebrew-biotools

Home for some bioinformatics homebrew formulae used in my work 🍺🔬

jekyllthemes

A directory of the best-looking themes for Jekyll blogs

Packt-Publishing-Free-Learning

Scripts that automatically claim and download free daily eBooks from https://www.packtpub.com/packt/offers/free-learning

r-novice-inflammation

Software Carpentry introduction to R for novices using inflammation data.

rmsd

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

rscripts

A bunch of R scripts for training/testing SNNS neural networks

shields

Concise, consistent, and legible badges in SVG and raster format