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🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Scripts to import your FeatureCounts output into DEXSeq
scripts for RNA-Seq analysis
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
This repository contatins a pipeline for RNA-Seq data processing using featurecounts for gene count generation
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
Scripts to index and align Bovine genome with HISAT2
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
A pipeline to call intron and intergenic eRNAs from PRO-seq Data
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.