featurecounts

There are 0 repository under featurecounts topic.

bioinfo-notebook
rnnh / bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
bash bash-script bioconda bioinformatics bioinformatics-notebook bioinformatics-programs conda fastq-dump featurecounts ubuntu video-demonstration windows-subsystem
Language:Shell 144
vivekbhr / Subread_to_DEXSeq
Scripts to import your FeatureCounts output into DEXSeq
dexseq featurecounts rna-seq
Language:Python 29
bpucker / RNA-Seq_analysis
scripts for RNA-Seq analysis
count-table rna-seq-analysis python gff featurecounts reference-genes annotations gene-expression tpm fpkm
Language:Python 25
hanielcedraz / BAQCOM
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
bioinformatics bioinformatics-pipeline fastqc featurecounts hisat2 htseq-count mapping multiqc quality-control rna-seq-aligner rna-seq-analysis rna-seq-mapping rna-seq-pipeline rna-seq-qc rnaseqpipeline star trimmomatic
Language:R 8
uhh-lt / lefex
A tool for extraction of lexical features from text based on UIMA and MapReduce
dependency-parser distributional-semantics feature-extraction extract-features featurecounts
Language:Java 4
yejg2017 / Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
fastqc htseq salmon star bowtie2 featurecounts multiqc
Language:Shell 2
hernanmd / hisat2_bovine
Scripts to index and align Bovine genome with HISAT2
hisat2 bash bioinformatics genome genome-alignment gff3 featurecounts
Language:Shell 1
Pinky-cloud224 / snakemake_workflow_rna_seq_data_analysis
conda config cutadapt fastq-files fastqc featurecounts htseq-count jupyter-notebook kallisto multiqc paired-end python3 rna-seq salmon snakemake-workflow tpm
Language:Jupyter Notebook 1
gih0004 / RNA_Seq_featurecounts
This repository contatins a pipeline for RNA-Seq data processing using featurecounts for gene count generation
featurecounts rna-seq
Language:Shell 0
MaxGreil / rnaseq
Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R
bioinformatics docker featurecounts hisat2 nextflow pipeline quality-control rna-seq rna-seq-analysis rna-seq-pipeline
Language:HTML 0
mattgalbraith / subread-docker-singularity
Build Docker container for Subread package and (optionally) convert to Apptainer/Singularity.
apptainer docker featurecounts genomics sequencing singularity subread
Language:Dockerfile
monnieb92 / PROseq_Intron_Intergenic_Enhancers
A pipeline to call intron and intergenic eRNAs from PRO-seq Data
featurecounts homer macs2 pro-seq ernas intronic nrsa
Language:Shell