liftover

There are 0 repository under liftover topic.

• wurmlab / flo

  Same species annotation lift over pipeline.

  gene-predictiongffliftoverbioinformatics
  Language:Ruby 93

• jeremymcrae / liftover

  liftover for python, made fast with cython

  cythonpythonliftover
  Language:C++ 72

• josiahseaman / FluentDNA

  FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

  dnavisualizationfastasequencingbioinformaticsbioinformatics-toolfasta-sequenceschain-alignmentliftoverfluentddvfluentdnamsaproteinalignment
  Language:JavaScript 65

• XiaoTaoWang / HiCLift

  A fast and efficient tool for converting chromatin interaction data between genome assemblies

  3d-genomehi-cliftover
  Language:Python 61

• evotools / nf-LO

  A Nextflow workflow to generate lift over files for any pair of genomes

  bioinformaticsgenomeliftovernextflow-dsl2nextflow-workflow
  Language:Nextflow 51

• Kuanhao-Chao / LiftOn

  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

  genome-annotationhomolgyliftonliftoverprotein-maximization-algorithmt2tchm13-annotation
  Language:Python 48

• baoxingsong / GEAN

  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

  pseudo-genome-sequenceliftovergffvariant-recordsgene-structureannotationstransformation
  Language:C++ 44

• baudisgroup / segment-liftover

  Lifterover copy number segments in whole

  liftoversegmentucsc-liftovercopy-numberprobe
  Language:Python 23

• transbioZI / Gimpute

  An efficient genetic data imputation pipeline

  imputationgenotypingliftovergwasphasinghaplotypes
  Language:R 11

• chrovis / varity

  Variant translation library for Clojure

  clojurebioinformaticsvcfhgvsliftover
  Language:Clojure 7

• blachlylab / GLO

  Go Language implementation of LiftOver

  bioinformaticsliftover
  Language:Go 6

• stjude-rust-labs / chainfile

  A crate for working with genomics chain files.

  bioinformaticsgenomicsliftoverrust
  Language:Rust 6

• milescsmith / PLINKLiftOver

  Perform liftover on plink files

  bioinformaticsliftoverplinkgenetics
  Language:Python 5

• billzt / pyOverChain

  a python pipeline to generate chain files between different genome assemblies for LiftOver.

  liftovergenomeblat
  Language:Python 4

• cbrueffer / misc_bioinf

  Repository for miscellaneous bioinformatics scripts that may be useful to others.

  bioinformaticsvariant-annotationsliftover
  Language:Python 2

• blachlylab / swiftover

  Fast liftover

  ddlangbioinformaticsliftovergenomegenomics
  Language:D 1

• IMS-Bio2Core-Facility / polya_liftover

  A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

  bioinformatics-pipelinesnakemakecellrangerliftoverworkflowsingle-cell-rna-seqreproducibilitypythonshelltranscriptomicsfastqcmultiqc
  Language:Python 1

• mengzhou / mschain

  Scripts for making chain file for mm10 - ms10 liftover

  liftovervcf
  Language:Python 1

• danilovkiri / web-server-go-liftover

  A Go-written server for 23andMe-formatted raw data liftover

  golangpythonliftoverhtmlcssjs
  Language:Python 0

• maurya-anand / liftover

  Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

  bcftoolsgenomicsliftovervariant-call-formatvariant-calling
  Language:Python 0

• rishavray / agent

  Lift same species genome co-ordinates from one assembly to another

  genome-assemblyliftoverfasta
  Language:Python 0

• jacobwindsor / SQANTIExplorer

  Inter-sample analysis of SQANTI classifications

  rna-seqrna-sequencingtgspacbiopacbio-datapacbio-iso-seqbioinformaticsbioinformatics-toolbioinformatics-visualizationsqantigenome-browserliftover
  Language:R

• poglesbyg / liftover

  work for creating hg38 database files from hg19 sources

  bioinformaticsliftover
  Language:Python