alejandrogzi

gtfsort

A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.

gxf2bed

Fastest GTF/GFF-to-BED converter chilling around

bed2gtf

A high-performance BED-to-GTF converter written in Rust

bed2gff

BED-to-GFF3 converter that runs in parallel

noel

GTF/GFF per gene non-overlapping exon length calculator

postoga

The post-TOGA processing pipeline

stoseq

A portable storage-optimized RNA-seq processing pipeline

to-trans

A high-performance exon/CDS spliced transcriptome builder from fasta + GTF/GFF

alejandrogzi.github.io

My personal webpage

chainify

chainify your work!

PA-virdiscovery-pipeline

A custom viral discovery pipeline from avian-virus samples for the PA lab

thermut

Data processing and pipeline for "The role of the thermodynamic pressure in Lensky's long-term evolution experiment"

TOGA

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

alejandrogzi

bioconda-recipes

Conda recipes for the bioconda channel.

chaintools

Serialize and work with .chain files in Rust

gxf2chrom

Everything in .chrom from GTF/GFF

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!