Yannick Wurm research lab @ QMUL & Turing

sequenceserver

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

flo

Same species annotation lift over pipeline.

oswitch

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

genevalidator

GeneValidator: Identify problems with predicted genes

afra

Genome Annotation for the Masses

genevalidatorapp

A web wrapper for GeneValidator

genomicscourse

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

rubyscholar

Scrape Google Scholar Profile into a custom HTML using Ruby (Nokogiri)

NpSearch

NpSearch: Search for Neuropeptides

wurmlab.github.io

Wurm lab website

Bter_neonicotinoid_exposure_experiment

Caste- and pesticide-specific effects of neonicotinoid pesticide exposure on gene expression in bumblebees

CompareGenomeQualities

Reference free comparison of genome assemblies

QMUL-MSc-Programming-in-R-and-Using-Linux

SBC361-programming-in-R

QMUL's programming in R course

bibtexJournalConverter

Converts bibtex .bib journal entries from long to short journal title and vice-versa. Can also remove '.' from abbreviated journal titles.

tidbits

Dockerfiles

Dockerfiles

templates

Templates for applications and reports.

2019-11-allelic_bias_in_fire_ant_supergene

2021-fire-ant-social-supergene-introgression

Introgression events analysis of Solenopsis sp. supergene.

2022-amel_bter_expression_nachrs

Comparative expression analysis of nAChR subunit genes in Apis mellifera and Bombus terrestris

BioNano-Irys-tools

tools to work with BioNano Irys optical maps (cmaps)

Fire_ant_viral_load

genevalidatorappAPI

An API for GeneValidatorApp

cli-boot.camp

:computer: command-line bootcamp adventure in your browser

crowdCheckingTableOfContents

haplodiploid_simulations

SLiM simulations of haplodiploid populations

msc_assemblies

simulate_chromosome_length_evolution

to_allmaps

Scripts to use RADseq, RNAseq, and BioNano data with ALLMAPS for chromosomal scaffolding of genome assemblies.