bpucker

Boas Pucker's repositories

PythonTUBS

Python introduction for life scientists

Language:PythonGPL-3.042 20

teaching

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

40 40

MGSE

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

Language:PythonGPL-3.028 3 2

MYB_annotator

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.

Language:PythonGPL-3.016 3 3

Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets

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MybMonday

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

Language:Python12 60

KIPEs

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.

Language:PythonGPL-3.010 4 2

script_collection

Collection of scripts to solve small bioinformatic challenges.

Language:PythonGPL-3.09 20

NAVIP

Neighborhood-Aware Variant Impact Predictor

Language:PythonGPL-3.05 5 2

bHLH_annotator

automatic annotation of bHLH gene family in plants

Language:PythonGPL-3.03 2 1

Boas_Pucker

Homepage of Boas Pucker listing publications and professional activities

3 10

CHS

CHS gene structure prediction analysis

Language:PythonGPL-3.03 20

GenomeAssembly

collection of tools for the analysis and cleaning of genome assemblies

Language:PythonGPL-3.03 10

ToolOverview

summary of available plant genomics tools

GPL-3.03 20

variant_calling

variant calling and processing

Language:PythonGPL-3.03 10

AppliedPlantTranscriptomics

Collection of materials belonging to the Applied Plant Transcriptomics course

GPL-3.02 10

RepeatsInBeets

phylogenetic generalized least square (PGLS) regressions for repeats and genome sizes in beets

Language:RGPL-3.02 10

yam_scripts

all my yam scripts

Language:Python2 20

CaryoAnthoBlock

investigation of expression levels of anthocyanin biosynthesis genes in the Caryophyllales

Language:Python1 20

CoExp

Co-Expression analysis tool

Language:PythonGPL-3.01 20

lycocyc

collection of scripts for lycopene cyclase analysis

Language:PythonGPL-3.01 20

Overview

Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

GPL-3.01 10