gff3
There are 0 repository under gff3 topic.
genometools / genometools
GenomeTools genome analysis system.
Language:C 279- pyGenomeViz
moshi4 / pyGenomeViz
A genome visualization python package for comparative genomics
Language:Python 230 - Language:Python 85
NBISweden / EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Language:Python 58billzt / gff3sort
GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools
Language:Perl 45tjparnell / biotoolbox
Tools for querying and analysis of genomic data
Language:Perl 27BioInterchange / Ontologies
Home of the Genomic Feature and Variation Ontology (GFVO)
Language:Ruby 16NCBI-Hackathons / Master_gff3_parser
Convert sequence IDs between ucsc/refseq/genbank
Language:Python 16IPK-BIT / divbrowse
A web application for interactive visualization and exploratory data analysis of variant call matrices
Language:Svelte 15- Language:Julia 14
biosustain / goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Language:Python 14vejnar / FONtools
JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage
Language:Python 13- Language:Julia 12
- Language:Python 8
fmalmeida / gff-toolbox
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
Language:Python 7alejandrogzi / bed2gff
BED-to-GFF3 converter that runs in parallel
Language:Rust 6- Language:R 6
NAL-i5K / AgBioData_GFF3_recommendation
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
- Language:Shell 4
DarisCappelletti / Gff3-tools
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
Language:ASP.NET 3dmyersturnbull / bioio
Micro-libraries for reading and writing genomic sequence data in various formats.
Language:Java 3Genomic linked data converter. Interchange GFF, GVF, VCF files via JSON.
Language:C 2corwur / gfftoneo4j
Tools for importing GFF files to a Neo4J graph database
Language:Scala 2- Language:Python 1
erkinacar5 / SortedNucleotideCounter
This code counts the mapped nucleotide number in given SAM file according to given GFF file.
Language:Java 1Grelot / vcfsynonymous
read VCF and select synonymous or non-synonymous coding variants
Language:Python 1hernanmd / hisat2_bovine
Scripts to index and align Bovine genome with HISAT2
Language:Shell 1- Language:Python 1
jakechamblee / BPROM_to_GFF3_converter
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
Language:Python 1AxelGiottonini / EMBLish
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
Language:Python 0brettwhitty / bw-msu-tools
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Language:Perl 0mcamagna / GFF2DDBJ
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
Language:Python 0pguenzi-tiberi / script_trinotate_to_gff
A little script to print a gff3 file
Language:Python 0- Language:Python 0
hassanfa / GFFtoolkit
Extracts information from GFF and prepare them in bed format
Language:Shellkcajj / human_genome_webapp
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
Language:HTML
