There are 0 repository under gff3 topic.
GenomeTools genome analysis system.
A genome visualization python package for comparative genomics
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Tools for querying and analysis of genomic data
Home of the Genomic Feature and Variation Ontology (GFVO)
Convert sequence IDs between ucsc/refseq/genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
cool BED-to-GFF3 converter that runs in parallel
Gff-toolbox is a toolbox of commands that enables one to get the gist of their GFF annotation files, as well as to analyse them in different ways.
The AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
C# web tool for reading GFF3 files, filtering, ordering, extracting information into Excel, GFF3 files, CDS files, and comparing GFF3 data with FASTA and CDS files.
Micro-libraries for reading and writing genomic sequence data in various formats.
Genomic linked data converter. Interchange GFF, GVF, VCF files via JSON.
Tools for importing GFF files to a Neo4J graph database
This code counts the mapped nucleotide number in given SAM file according to given GFF file.
read VCF and select synonymous or non-synonymous coding variants
Scripts to index and align Bovine genome with HISAT2
Converts the string output of BPROM, a promoter prediction software tool, to the GFF3 file format. Used in a CPT Galaxy phage genomics workflow
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
final project of the advanced programming classes, course of Genomics bachelor degree - UniBo.
This tool will convert GFF3 files into DDBJ annotation files. It was created to work with Braker2 generated GFF files, but should work with any other GFF3 file as well.
A little script to print a gff3 file
parse GFF and output a CSV file for gggenes. 解析并将 gff 中需要的内容输出到 csv 文件中以供 R 包 gggenes 调用。