exon

There are 1 repository under exon topic.

saketkc / gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
gencode-regions gencode-files exon utr gene cds promoters gtf-reader
Language:Jupyter Notebook 95
Abishnoi69 / ExonRobot
A Fast Telegram Group Management Bot Written In Python Using python-telegram-bot.
exonrobot group-help group-help-bot management tg-bot ptb-up exon pyrogram python-telegram-bot python3 telethon group-management telegram telegram-bot
Language:Python 83
dputhier / pygtftk
A python package and a set of shell commands to handle GTF files
bed bigwig bioinformatics cds chip-seq dna-sequences exon gene genomic genomics gtf intron ngs rna-seq splicing transcript tss tts
Language:Python 43
leekgroup / recount
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
annotation-agnostic bioconductor count derfinder deseq2 exon gene human illumina junction r recount rnaseq rstats
Language:R 40
wososa / PSI-Sigma
PSI-Sigma
splicing-event psi-values exon
Language:Perl 35
LieberInstitute / recount3
Explore and download data from the recount3 project
bioconductor rstats rnaseq derfinder count gene exon junction annotation-agnostic illumina human mouse r recount recount3
Language:R 29
mikessh / mageri
MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
bioinformatics cancer umi variant mutation mapping amplicon exon ctdna
Language:Java 21
bcgsc / ChopStitch
Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
transcriptome-assembly putative-exons splice splice-graphs exon bloom-filter
Language:C++ 12
PhyloSofS-Team / thoraxe
Use Thor's Axe to cut exons into their evolutionary building blocks :zap:
bioinformatics alternative-splicing protein-evolution exon homology orthology-inference
Language:Python 10
matteocereda / RNAmotifs
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
splicing-analyses splicing-visualization rna-splicing-map rna-binding-proteins multivalent-rna-motifs alternative-splicing-analysis exon identify-clusters rna-binding r
Language:C++ 8
GenomeAnalytica
ahmedtariq / GenomeAnalytica
This is a package that provide tools to extract different genome architecture features, build taxonomy lineage and test features against certain value in taxonomy rank in fully automated pipeline.
bioinformatics genome-architecture-features genomics taxonomy statistics significance-testing exon gene
Language:Shell 5
Anugrahsr / exonNum
A tool to find genes of user specific exon number
exon bioinformatics gene genomics shell-script first-project dna exon-quantification exonum
Language:Shell 4
LieberInstitute / recountWorkflow
Public repo for the recount Bioconductor workflow that is visible at http://bioconductor.org/help/workflows/
bioconductor rstats rnaseq derfinder deseq2 count gene exon junction annotation-agnostic illumina human r recount
Language:TeX 4
alejandrogzi / noel
GTF/GFF per gene non-overlapping exon length calculator
exon gene-annotation gff gtf length non-overlapping
Language:Rust 3
jlanga / exfi
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
transcriptomics rna-seq assembly kmer bloom-filter abyss bedtools python3 conda bioconda biobloomtools exon transcriptome abyss-bloom biopython pandas network splice-graphs
Language:Python 3
JLTrincado / MxFinder
Testing of mutual exclussion between pairs of exons of NMD
exon mutual-exclusion nmd
Language:Python 1
LieberInstitute / recountWorkshop
Package for the recount workshop for BioC2017
bioconductor rstats rnaseq derfinder deseq2 count gene exon junction annotation-agnostic illumina human r recount
Language:HTML 1
nalaekaw / exon_intron
Deep neural network for splice sites prediction
cnn exon intron splice-junctions splice-site
Language:Jupyter Notebook 1
lokapal / hg38exons
The set of scripts to obtain GRCh38/hg38 exons genome track
bionformatics exon
Language:Perl 0
Rosalaver / Project-G
Alignment of biological sequences and primer designing
csharp csharp-library genetic-algorithm primer-design aligned-sequences pcr-primer exon
0
charles-plessy / gencode-feature-lengths
Exon lenghts in GENCODE 26
gencode exon
Language:HTML
lcolladotor / biopeerprize2018
Submission for the Bioinformatics Peer Prize 2018
rnaseq human recount r rstats count gene exon junction illumina bioinformatics thinkable bioconductor
Language:HTML
LieberInstitute / recountWorkshop2019
Workshop proposal for BioC2019 centered around the recount2 resource
bioconductor rstats rnaseq derfinder deseq2 count gene exon junction annotation-agnostic illumina human r recount
Language:TeX

exon

saketkc / gencode_regions

Abishnoi69 / ExonRobot

dputhier / pygtftk

leekgroup / recount

wososa / PSI-Sigma

LieberInstitute / recount3

mikessh / mageri

bcgsc / ChopStitch

PhyloSofS-Team / thoraxe

matteocereda / RNAmotifs

ahmedtariq / GenomeAnalytica

Anugrahsr / exonNum

LieberInstitute / recountWorkflow

alejandrogzi / noel

jlanga / exfi

JLTrincado / MxFinder

LieberInstitute / recountWorkshop

nalaekaw / exon_intron

lokapal / hg38exons

Rosalaver / Project-G

charles-plessy / gencode-feature-lengths

lcolladotor / biopeerprize2018

LieberInstitute / recountWorkshop2019