dynamical-modeling
There are 2 repositories under dynamical-modeling topic.
Zymrael / awesome-neural-ode
A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.
- Language:Python 29
ngorbach / Variational_Gradient_Matching_for_Dynamical_Systems
Sample code for the NIPS paper "Scalable Variational Inference for Dynamical Systems"
Language:Jupyter Notebook 25agosztolai / MARBLE
Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets. https://agosztolai.github.io/MARBLE/
Language:Python 23- parPE
ICB-DCM / parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Language:C++ 19 KarrLab / intro_to_wc_modeling
Whole-cell modeling tutorials
Language:Python 16- control-theory
ltgio / control-theory
control theory repo
Language:C 12 horchler / Passive-Dynamic-Walking
Simulation and animation of simple passive dynamic walking models in Matlab
Language:MATLAB 10HopkinsIDD / flepiMoP
The Flexible Epidemic Modeling Pipeline
Language:HTML 6PericlesHat / enhanced-GPDM
Official implementation of Enhanced Gaussian process dynamical models with knowledge transfer for long-term battery degradation forecasting.
Language:Python 6charlesdavid / JED
JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
Language:HTML 5Framework for systematically and scalably designing whole-cell models from large datasets
Language:Python 5MetaSys-LISBP / acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
Language:Component Pascal 5alexandershaw4 / aoptim
a gradient-based optimisation routine for highly parameterised non-linear dynamical models
Language:MATLAB 30xOsiris / 3-Space-Frenet-Projection-Dynamics
Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.
Language:R 2- Biosimulators_COPASI
biosimulators / Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology
Language:Python 2krisrs1128 / mbtransfer
`mbtransfer` is an R package for modeling microbiome dynamics. It provides functions for fitting transfer function models, simulating counterfactual trajectories, and selecting significantly perturbed taxa using mirror statistics.
Language:R 2MultiagentDynamics / Human-Machine-Shepherding
Employing Human Social-Motor Solutions for Human-Machine Interaction in Dynamical Task Contexts
Language:ASP 2Using Python with matplotlib to calculate and visualize/analyze randomly seeded orbits of 3 different functions.
Language:Python 1Detailed paper describing python program to calculate fixed points of various functions and calculate the order of the orbits for a given seed.
Language:Python 1- Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 GeoKrom / NTUA-Modelling-and-Control-of-Dynamical-Systems-course
Analytical & Programming exercises on linear control systems
Language:MATLAB 1privong / identikit2
Modified version of the Identikit 2 tool for modeling galaxy interactions
Language:C 1A library of hybrid N-body + test particle simulations for dynamical modeling of galaxy interactions.
- Language:Python 1
mariaalineg / Julia-Dynamical-Systems-Tools
Nonlinear dynamical systems simulations using Julia with Matlab interoperability
Language:Jupyter Notebook 0NoahWong96 / Masters-Thesis
Dynamics of Newton's Method for a Nonanalytical Perturbation on a Complex Quadratic Function
Language:Python 0rosherbal / thesis
Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)
Language:R 0angellareo / eea-work-ghg-20-30-model
Computational model for the report: Work scenarios in the ecosocial transition - 2020-2030.
Language:PythonWebsite for the Flexible Epidemic Modeling Pipeline
Language:JavaScriptsarmadahmad8 / Dynamical-Model-of-a-Pistol
Dynamical Model of a Pistol in Simulink
- Language:R
