dynamical-modeling
There are 2 repositories under dynamical-modeling topic.
Zymrael / awesome-neural-ode
A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.
Dynamics-of-Neural-Systems-Lab / MARBLE
Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets.
Language:Python 88- Language:Python 30
ngorbach / Variational_Gradient_Matching_for_Dynamical_Systems
Sample code for the NIPS paper "Scalable Variational Inference for Dynamical Systems"
Language:Jupyter Notebook 26- parPE
ICB-DCM / parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Language:C++ 22 - control-theory
ltgio / control-theory
control theory repo
Language:C 17 KarrLab / intro_to_wc_modeling
Whole-cell modeling tutorials
Language:Python 16PericlesHat / enhanced-GPDM
Official implementation of Enhanced Gaussian Process Dynamical Modeling for Battery Health Status Forecasting.
Language:Python 16horchler / Passive-Dynamic-Walking
Simulation and animation of simple passive dynamic walking models in Matlab
Language:MATLAB 12EXP-code / pyEXP-examples
Example usage of the pyEXP library for dynamical discovery
Language:Jupyter Notebook 10HopkinsIDD / flepiMoP
The Flexible Epidemic Modeling Pipeline
Language:HTML 8BanaanKiamanesh / ManiDyn
ManiDyn is a MATLAB toolbox for symbolic modelling of serial-link robot Manipulators.
Language:MATLAB 7MetaSys-LISBP / acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
Language:Component Pascal 7Framework for systematically and scalably designing whole-cell models from large datasets
Language:Python 6charlesdavid / JED
JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
Language:HTML 5krisrs1128 / mbtransfer
`mbtransfer` is an R package for modeling microbiome dynamics. It provides functions for fitting transfer function models, simulating counterfactual trajectories, and selecting significantly perturbed taxa using mirror statistics.
Language:R 4raj-gun / NonSysID
A MatLab package for System Identification using linear and nonlinear auto-regresive models (N)AR, (N)ARX and (N)ARMAX models
Language:MATLAB 40xOsiris / 3-Space-Frenet-Projection-Dynamics
Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.
Language:R 2Detailed paper describing python program to calculate fixed points of various functions and calculate the order of the orbits for a given seed.
Language:Python 2- Biosimulators_COPASI
biosimulators / Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 GeoKrom / NTUA-Modelling-and-Control-of-Dynamical-Systems-course
Analytical & Programming exercises on linear control systems
Language:MATLAB 2Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology
Language:Python 2MultiagentDynamics / Human-Machine-Shepherding
Employing Human Social-Motor Solutions for Human-Machine Interaction in Dynamical Task Contexts
Language:ASP 2privong / identikit2
Modified version of the Identikit 2 tool for modeling galaxy interactions
Language:C 2A library of hybrid N-body + test particle simulations for dynamical modeling of galaxy interactions.
Using Python with matplotlib to calculate and visualize/analyze randomly seeded orbits of 3 different functions.
Language:Python 1- Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Language:Python 1
sarmadahmad8 / Dynamical-Model-of-a-Pistol
Dynamical Model of a Pistol in Simulink
linus-md / k_pendulum
Generate DAEs of k-pendulums.
Language:Python 0BaseMax / IWDSAI-2025
This repository contains the LaTeX source code for the abstract of my talk titled "Using AI to Model Real-World Systems: From Weather to Economics" for the Fifth International Workshop on Dynamical Systems & AI (IWDS&AI 2025), which will be held on April 16-17, 2025, at the University of Kufa, AlNajaf, Iraq.
Language:TeXBenCellini / free-forced-double-pendulum
Derivation & simualtion of the the dynamics of a rigid-body double pendulum with a moving base, control torques, and an external wind force .
Language:PythonGunesCaginAydin / dynamical-metalearning
Comparitive work on dynamical identification that extends previous in-context learning based identification methods to different neural architectures.
Language:Pythonkarthik-d / dynamical-modeling-of-biological-systems
Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.
Language:MATLAB
