copasi

There are 0 repository under copasi topic.

• copasi / COPASI

  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  copasisimulationmodelingsystems-biologydynamicschemistrybiochemistrykineticschemical-kinetics
  Language:Component Pascal 86

• copasi / basico

  A simplified python interface to COPASI.

  pythoncopasi
  Language:Python 18
• spatial-model-editor

  spatial-model-editor / spatial-model-editor

  Spatial bio-chemical reaction model editor and simulator

  spatial-simulationsystems-biologycopasireaction-diffusiondunesbmlsbml-modellibsbmlpdes
  Language:C++ 14

• CiaranWelsh / pycotools3

  A Python toolbox for COPASI

  copasipythonprofile-likelihoodparameter-estimationode-models
  Language:Python 13

• CiaranWelsh / pycotools

  A Python Toolbox for COPASI

  copasiodemodelling-biological-systemssystems-biologyparameter-estimation
  Language:Jupyter Notebook 7

• copasi / copasi-dependencies

  Collection of OpenSource libraries to simplify COPASI build

  copasicmakeqwtmml-widgetsbmlsedmlnumlcombine
  Language:C++ 7

• jpahle / CoRC

  The Copasi R connector, a high-level R API for Copasi

  copasirswig
  Language:R 7

• pmendes / COVID19

  code and models to analyze COVID-19 data for Connecticut and other states

  covid-19modelscopasiepidemiology
  Language:Component Pascal 6
• MetEvolSim

  charlesrocabert / MetEvolSim

  MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

  biochemical-networkscopasievolutionmetabolic-abundancesmetabolic-networkmetabolomesbmlsimulationsystems-biology
  Language:Python 5

• MetaSys-LISBP / acetate_regulation

  Kinetic modeling of glucose and acetate metabolisms in E. coli

  systems-biologymetabolic-modelsmetabolic-flux-analysisisotope-labeling-experiments13c-fluxomicsmetabolomicsescherichia-colifluxomicsdynamical-systemsdynamical-modelingkinetic-modelingregulationmetabolic-controlcopasiacetate-overflowmetabolismmetabolic-network
  Language:Component Pascal 5

• copasi / python-petab-importer

  PEtab --> COPASI importer

  copasipetabpython
  Language:Python 3
• covid19-model

  GeoRouv / covid19-model

  📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.

  covid-19compartmental-modelepidemiological-modelsepidemiological-predictionscopasiseird-modelcoronavirus
  Language:Component Pascal 3

• atiselsts / spacescanner

  SpaceScanner: biological model optimization space scanner

  copasioptimizationsystems-biology
  Language:Component Pascal 2
• Biosimulators_COPASI

  biosimulators / Biosimulators_COPASI

  COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

  copasidynamical-modelingsed-mlcombine-archiveomex-metadatasbmlbiochemical-networkssystems-biologycomputational-biologysimulationdockerbiosimulatorspython
  Language:Python 2

• copasi / copasi-api

  A more general, higher level, C++ API which can also be leveraged by other programming languages.

  copasi
  Language:C++ 2

• copasi / COPASI.js

  Emscripten COPASI Javascript Bindings

  copasinodejs
  Language:C++ 1

• copasi / python-copasi-testsuite

  Python COPASI testing

  copasipythontesting-tools
  Language:Component Pascal 1

• LedaKatopodi / compartmental-models

  COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.

  copasicompartmental-modelscovid-19
  Language:Component Pascal 1

• surajsept / pycoexp

  A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.

  python3copasiparameter-scansteady-state-analysismetabolic-control-analysisoptimizationtime-course
  Language:Python 1

• jpahle / DynamiCoRC

  Dynamic Publication Media with the COPASI R Connector (CoRC)

  rcopasirmarkdownjupyter
  Language:Jupyter Notebook 0

• MetaSys-LISBP / glucose_acetate_interplay

  Supplementary information of Millard et al. 2023

  acetate-overflowbiotechnologyescherichia-colifluxkinetic-modelingpredictive-modelingsystems-biologycopasiglucosemetabolic-controlregulation
  Language:HTML 0

• MolecularBioinformatics / thermophilesNAD

  Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.

  nad-metabolismmetabolic-modelstemperature-dependencecopasipython3
  Language:Jupyter Notebook 0

• amandachen1024 / Glycolysis-Model

  copasigeneticsbiological-simulations
  Language:Component Pascal

• fbergmann / harmony_scripts

  Utility scripts written during HARMONY 2021

  sbmlcopasisedmlcombine
  Language:Python

• fbergmann / pyabc-copasi

  Example Scripts for using COPASI simulations in pyABC

  pyabccopasisbmlpetab
  Language:Python

• fbergmann / pyodide-copasi

  Vue3 Project using Pyodide / basico and python-copasi emscripten

  copasiprimevuesbmlsbml-simulationvue3
  Language:CSS

• ModelDBRepository / 151686

  Stochastic model of the olfactory cilium transduction and adaptation (Antunes et al 2014)

  olfactory-receptor-glu-cellion-channel-kinetics-detailed-neuronal-models-signcopasi
  Language:Component Pascal

• Sheeran-X / Tonic_activity_in_C.elegans_O2-sensing_neurons

  A quantitative model based on biochemical kinetics, repesenting the tonic Calcium activity and Calcium signalling in C. elegans Oxygen-sensing neurons, encoded in COPASI..

  tonic-calcium-activitycalcium-signallingcopasi
  Language:Component Pascal

• widdowquinn / SI_Pritchard_Birch_2014

  Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210

  plant-microbe-interactionscopasireproducible-researchreproducible-paperbiological-simulations
  Language:Component Pascal