stochastic-simulation-algorithm
There are 2 repositories under stochastic-simulation-algorithm topic.
crflynn / stochastic
Generate realizations of stochastic processes in python.
Language:Python 428SystemsBioinformatics / stochpy
StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
Language:Python 39danieljsharpe / DISCOTRESS
🦜 DISCOTRESS 🦜 is a software package to simulate and analyse the dynamics on arbitrary Markov chains
Language:C++ 24DiODeProject / MuMoT
Multiscale Modelling Tool - mathematical modelling without the maths
Language:Python 21rte-antares-rpackage / antaresViz
ANTARES Visualizations
Language:R 20biocircuits / bioscrape
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Language:Jupyter Notebook 18wcota / dynSIS-networkx
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
Language:Python 16xiaomingfu2013 / DelaySSAToolkit.jl
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
Language:Julia 15hammouc / Multilevel-Monte-Carlo-with-Importance-Sampling-for-SRNs
This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286
Language:MATLAB 10Implementation of SIS epidemic model for large and heterogeneous networks using Fortran.
Language:Fortran 9Mrktn / heston-pricing
Demonstrates how to price derivatives in a Heston framework, using successive approximations of the invariant distribution of a Markov ergodic diffusion with decreasing time discretization steps. The framework is that of G. Pagès & F. Panloup.
Language:C++ 6- stochastic-processes
trojanink / stochastic-processes
codes from theorems in the field of stochastic processes
Language:MATLAB 5 Learn to get started using DISCOTRESS with these tutorials! Then apply to your own Markov chains in ecology 🦜🌴 economics 💸📈 biophysics 🧬🦠 and more!
Language:Brainfuck 4Gapouliasis / Stochastic-Models
Usefull models simulating stochastic processes in different times scales with or without reproduction of long-term percistence (Hurst-Kolmogorov behaviour). Also a simple tool for determening the Hurst coefficient is provided. All code is in the form of Matlab functions.
Language:MATLAB 3justinnk / mason-ssa
An extension to the MASON simulation framework introducing agent-based modelling via dependency-aware stochastic simulation algorithms, powered by aspect-oriented programming.
Language:Java 3kgustafIDM / fractair
Fractional calculus and commercial air transport models used in: arxiv.org/abs/1601.07655
Language:MATLAB 3HadrienNU / LangevinIntegrators.jl
A set of integrators for the Langevin equation.
Language:Julia 2ISIMA-begarco / Simulation_Lapins
[ISIMA2] Stochastic Simulation project about rabbit's breeding
Language:HTML 2- Language:Haskell 2
- Language:Python 2
- Biosimulators_BioNetGen
biosimulators / Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 draeger-lab / FERN
FERN (Framework for Evaluation of Reaction Networks) is an extensible and comprehensive framework for efficient simulations and analysis of chemical reaction networks written in Java.
Language:Java 1- Language:Jupyter Notebook 1
HarryR / gamesim
Simulate games involving a system of multiple state machines interacting with each other
Language:Python 1- Language:R 1
kamal0013 / DHMC
Python code of the Decadal and Hierarchical Markov Chain (DHMC) model for stochastic simulation of daily rainfall
Language:Python 1rafaelstjf / STOCBIONET
STOCBIONET is a software for stochastic simulation of biochemical networks
Language:C++ 1- Language:C++ 1
alexplaka / AbStochKin
Agent-based Stochastic Kinetics
Language:Python 0lillux / gillespie_ssa
Implementation of Gillespie Stochastic Simulation Algorithm
Language:Jupyter Notebook 0locuoco / stochastic-chemical-kinetics
Stochastic chemical kinetics using Gillespie algorithm and chemical master equation, application to enzyme kinetics
Language:C++ 0ManuelaCarriero / PyExTra
Implementation of algorithms for simulating gene expression and translation in order to investigate about NF-kB model in colon cancer cells.
Language:TeX 0PhyBi / miRNA-negative-feedback
This repository contains code for simulatuing 'miRNA-mediated negative feedback loop' model, given in the manuscript 'Effects of miRNA-mediated negative feedback on gene expression', using Gillespie algorithm
Language:Fortran 0sedaradoykova / BIOL0044_protometabolism_modelling
Code and reading materials related to my BIOL0044 MSci Investigative Project at the Lane Origins lab.
Language:HTML 0lepton01 / stochastic
Repository for stochastic methods scripts and functions.
Language:Julia
