metabolic-flux-analysis

There are 1 repository under metabolic-flux-analysis topic.

tubanlee / MM
Infer metabolic directions from moment differences of mass-weighted intensity distributions
annotations mass-spectra mass-spectrometry mass-spectrometry-data mass-spectrum metabolic-flux-analysis metabolic-models metabolic-network metabolic-networks metabolic-pathways metabolic-engineering metabolomics moment moments
Language:R 59
jclachance / BOFdat
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
genome-scale-models biomass-objective-function metabolic-models metabolic-flux-analysis machine-learning
Language:Jupyter Notebook 26
MetaSys-LISBP / IsoCor
IsoCor: Isotope Correction for mass spectrometry labeling experiments
ms-data isotope-labeling-experiments isotope mass-spectrometry metabolomics isotope-correction fluxomics 13c-mfa metabolic-flux-analysis correction-natural-abundance isotopologue-distribution isotopic-inchi
Language:Python 24
modsim / FluxML
A Universal Modeling Language for Metabolic Flux Analysis
metabolic-engineering metabolic-models metabolic-network modeling-language specification-language metabolic-flux-analysis 13c-mfa
Language:C++ 9
MetaSys-LISBP / IsoSim
IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems
13c-mfa metabolic-models metabolic-flux-analysis dynamical-systems systems-biology synthetic-biology kinetic-modeling stoichiometric-modeling 13c-fluxomics
Language:R 6
MetaSys-LISBP / PhysioFit
Estimation of extracellular fluxes and growth rate
metabolism metabolic-flux-analysis exometabolome extracellular-fluxes exchange-fluxes metabolic-models systems-biology fluxomics mass-spectrometry nuclear-magnetic-resonance isotope-labeling-experiments biotechnology synthetic-biology
Language:Python 6
MetaSys-LISBP / acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
systems-biology metabolic-models metabolic-flux-analysis isotope-labeling-experiments 13c-fluxomics metabolomics escherichia-coli fluxomics dynamical-systems dynamical-modeling kinetic-modeling regulation metabolic-control copasi acetate-overflow metabolism metabolic-network
Language:Component Pascal 5
jdreyf / sybilxf
R package for integration of Seahorse extracellular flux (XF) data with metabolic modeling utilizing the R modeling package sybil.
metabolic-flux-analysis
Language:R 3
MetaSys-LISBP / IsoQ
Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry
metabolomics fluxomics 13c-mfa mass-spectrometry isotopologue-distribution metabolic-flux-analysis isotope-labeling-experiments ms-data isotope
Language:Python 2
DeepenData / NAMU2021b_old
Proyecto para las redes metabolicas humanas.
metabolic-network metabolic-flux-analysis cobrapy network-analysis
Language:HTML 0
taketam / GridProd
cobra iaf1260 constraint-based-modeling metabolic-flux-analysis design-of-reaction-networks
Language:MATLAB 0
maranasgroup / yeastsMFA
Repository for yeasts MFA related files
metabolic-flux-analysis metabolism
Language:MATLAB