escherichia-coli
There are 0 repository under escherichia-coli topic.
MetaSys-LISBP / acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
Language:Component Pascal 5SBRG / ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
Language:Python 4amrnet / amrnet
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
Language:JavaScript 2btjaden / Compendium
Escherichia coli Transcriptome Assembly from a Compendium of RNA-seq Data Sets
Language:Python 2dev-ev / isobaric-correlations
Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
Language:Jupyter Notebook 2- Language:C++ 2
13C metabolic flux analysis of the extracellular GL-GNT by-pass of E. coli
Language:Component Pascal 1GBS-SynBioLab / Cell_simulator
Integrated development environment for the design of synthetic biological systems, from DNA sequence to systems level
Language:MATLAB 0GiancarloCroce / DCA_polymorphism_Ecoli
Decipher polymorphism in E. coli strains with coevolutionary models
Language:Jupyter Notebook 0IBPA / OPEX
An optimal experimental design framework for accelerating knowledge discovery using gene expression data
Language:R 0JohnsonSingerLab / ST131Typer
In silico PCR command line tool for typing Escherichia coli ST131
Language:Shell 0Supplementary information of Millard et al. 2023
Language:HTML 0pierremillard / glucose_acetate_interplay
Supplementary information of Millard et al. 2022
Language:HTML 0rebear217 / PhageMFiles
.m, .MAT, .PDF, .XLS files for "Canonical host-pathogen tradeoffs subverted by mutations with dual benefits"
Language:MATLAB 0dachbrown / dissertation-bioinformatics-machine-learning
Collection of planning documents, visualizations, and presentations for my dissertation research. "Investigating Multidrug Resistance in Escherichia coli with Phylogenetics and Machine Learning"
Language:Shellncbi / stxtyper
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Language:C++Sarah-Hesham-2022 / Drug-Design-AutoDock-Tools-MBP-D-Ribose
Molecular docking is one of the molecular modeling methods that predicts the preferred orientation of one molecule (ligand) to another (receptor) when bound to each other to form a stable complex (lowest energy state).
