bionetgen

There are 0 repository under bionetgen topic.

LoLab-MSM / pyvipr
Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
jupyter-widget pysb systems-biology cytoscapejs visualization network-visualization networkx sbml bionetgen sbgn jupyterlab-extension tellurium
Language:Jupyter Notebook 27
achattaraj / Ksp_phase_separation
Tools for data generation and data analysis for the eLife research article - "The solubility product extends the buffering concept to heterotypic biomolecular condensates"
biophysics computational-biology stochastic-simulations biomolecular-simulation bionetgen springsalad
Language:Python 1
biosimulations-rulehub
biosimulations / biosimulations-rulehub
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
bionetgen biosimulations bngl combine computational-biology omex rulehub sed-ml systems-biology
Language:Python 1
Biosimulators_BioNetGen
biosimulators / Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology rule-based-modeling network-free-simulation simulation bionetgen sed-ml combine-archive omex-metadata stochastic-simulation-algorithm biochemical-networks dynamical-modeling docker biosimulators
Language:Python 1
mcellteam / Workshop_2020
Repository for models, descriptions, and software supporting the 2020 Workshop
cellblender cellblender-model bionetgen cellorganizer mcell mcell-tutorials simulation
Language:Jupyter Notebook 1
achattaraj / maximal_Solubility_product
Python scripts to analyze and visualize the data presented in the research article: "The maximum solubility product marks the threshold for condensation of multivalent biomolecules".
biomolecular-condensates molecular-simulation phase-transition python llps bionetgen data-analysis-python data-visualisation langevin-dynamics multivalent-clustering nfsim rule-based-modeling springsalad molclustpy
Language:Jupyter Notebook 0
MolClustPy
achattaraj / MolClustPy
A Python package to analyze multivalent biomolecular clusters.
bionetgen biophysics phase-transition rule-based-modeling biomolecular-condensates cell-signaling combinatorial-complexity multivalent-clustering nfsim systems-biology
Language:Jupyter Notebook 0
mcellteam / mcellRules
Rule Based Modeling using MCell, NFsim, and bionetgen
mcell bionetgen
Language:Jupyter Notebook
mcellteam / Workshop_2017
cellblender bionetgen mcell
Language:MATLAB