BioSimulators's repositories
Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_tutorials
Tutorials for BioSimulators
biosimulator-processes
Core implementations of simulator processes using the process-bigraph Process API
Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_simularium
Converting Biosimulators spatial simulation outputs into a Simularium-compliant format.
Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
.github
Profile for the BioSimulators organization
biosimulators-smoldyn
Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions
Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_LibSBMLSim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Biosimulators_smoldyn
Smoldyn biochemical network stochastic simulation program via BioSimulators-compliant python interface.
Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
edamontology
EDAM is an ontology of bioscientific data analysis and data management.
Smoldyn
Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions
sphinx-pretty-searchresults
Fork of "Sphinx: pretty search results" adding a necessary os import statement
xvfb-action
Fork of GabrielBB/xvfb-action