combine-archive

There are 0 repository under combine-archive topic.

PEtab
PEtab-dev / PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
systems-biology parameter-estimation sbml-model data-format sbml combine-archive modelling hacktoberfest
54
PEtab-dev / libpetab-python
Python package for working with PEtab files
combine-archive hacktoberfest parameter-estimation petab python sbml systems-biology
Language:Python 14
Biosimulators_test_suite
biosimulators / Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
systems-biology mathematical-modelling computational-biology sbml cellml sed-ml docker biosimulators combine-archive omex-metadata simulation biochemical-networks simulator research
Language:Python 7
Biosimulators_simulator_template
biosimulators / Biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
systems-biology mathematical-modelling simulation simulator computational-biology combine-archive omex-metadata sed-ml docker biosimulators python
Language:Python 4
Biosimulators_COBRApy
biosimulators / Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
cobrapy sbml sed-ml combine-archive flux-balance-analysis fba systems-biology computational-biology constraint-based-modeling biochemical-networks simulation omex-metadata docker biosimulators python
Language:Python 2
Biosimulators_COPASI
biosimulators / Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
copasi dynamical-modeling sed-ml combine-archive omex-metadata sbml biochemical-networks systems-biology computational-biology simulation docker biosimulators python
Language:Python 2
Biosimulators_BioNetGen
biosimulators / Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology rule-based-modeling network-free-simulation simulation bionetgen sed-ml combine-archive omex-metadata stochastic-simulation-algorithm biochemical-networks dynamical-modeling docker biosimulators
Language:Python 1
Biosimulators_GillesPy2
biosimulators / Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology computational-biology biochemical-networks stochastic-simulation-algorithm sbml sed-ml combine-archive gillespy2 stochss stochkit simulation omex-metadata dynamical-modeling docker biosimulators python
Language:Python 1
Biosimulators_tellurium
biosimulators / Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
systems-biology simulation sbml sed-ml tellurium computational-biology libroadrunner combine-archive omex-metadata dynamical-modeling biochemical-networks docker biosimulators python
Language:Python 1