parameter-estimation

There are 8 repositories under parameter-estimation topic.

casadi / casadi
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.
optimization nonlinear derivatives code-generation numerical-calculations academic-project scientific-computing mathematics symbolic-manipulation parameter-estimation optimal-control modular matlab octave python c-plus-plus library algorithmic-differentation nonlinear-programming
Language:C++ 1552
sbi-dev / sbi
Simulation-based inference toolkit
simulation-based-inference likelihood-free-inference bayesian-inference parameter-estimation pytorch machine-learning
Language:Python 521
stefanradev93 / BayesFlow
A Python library for amortized Bayesian workflows using generative neural networks.
bayesian-inference deep-learning model-comparison amortized-inference simulation-based invertible-networks parameter-estimation likelihood-free uncertainty-quantification
Language:Python 251
pints-team / pints
Probabilistic Inference on Noisy Time Series
bayesian-methods inverse-problems numerical-optimization parameter-estimation
Language:Python 207
pyPESTO
ICB-DCM / pyPESTO
python Parameter EStimation TOolbox
parameter-estimation optimization systems-biology python hacktoberfest
Language:Python 197
undark-lab / swyft
A system for scientific simulation-based inference at scale.
likelihood-free-inference machine-learning marginal-neural-ratio-estimation neural-ratio-estimation parameter-estimation python pytorch simulation-based-inference truncated-neural-ratio-estimation
Language:Jupyter Notebook 151
openmole / openmole
Workflow engine for exploration of simulation models using high throughput computing
scala workflow modeling-tool distributed-computing parameter-search scientific-computing workflow-engine grid parameter-tuning parameter-estimation egi dirac hyperparameters
Language:Scala 139
ControlSystemIdentification.jl
baggepinnen / ControlSystemIdentification.jl
System Identification toolbox, compatible with ControlSystems.jl
estimation transfer-function-estimation identification arx system-identification control-systems dynamical-systems spectral-analysis state-space-systems lti-system coherence time-series-analysis time-series subspace-identification n4sid frequency-response kalman-filter controls parameter-estimation
Language:Julia 123
usgs / pestpp
tools for scalable and non-intrusive parameter estimation, uncertainty analysis and sensitivity analysis
uncertainty-quantification parameter-estimation ensembles optimization-tools optimization sensitivity-analysis global-sensitivity-analysis parallel-computing non-intrusive ensemble-methods
Language:C++ 117
LowLevelParticleFilters.jl
baggepinnen / LowLevelParticleFilters.jl
State estimation, smoothing and parameter estimation using Kalman and particle filters.
particle-filter kalman-filter estimation state-estimation control-systems dynamical-systems sequential-monte-carlo bayesian-inference system-identification monte-carlo-methods unscented-kalman-filter extended-kalman-filter parameter-estimation prediction-error-method state-estimation-algorithms state-estimation-filters data-assimilation virtual-sensors controls virtual-sensing
Language:Julia 109
AMICI
AMICI-dev / AMICI
Advanced Multilanguage Interface to CVODES and IDAS
differentialequations sensitivities simulation adjoint-sensitivities forward-sensitivities sbml systemsbiology cvode python kinetic-modeling mechanistic-models sensitivity-analysis cvodes idas pysb petab ode parameter-estimation hacktoberfest modeling
Language:Jupyter Notebook 105
madsjulia / Mads.jl
MADS: Model Analysis & Decision Support
decision-support model-analysis calibration sensitivity-analysis uncertainty-quantification decision-making model-reduction machine-learning blind-source-separation inversion parameter-estimation high-performance-computing matrix-factorization data-analytics
Language:HTML 101
SciML / QuasiMonteCarlo.jl
Lightweight and easy generation of quasi-Monte Carlo sequences with a ton of different methods on one API for easy parameter exploration in scientific machine learning (SciML)
julia parameter-estimation physics-informed-learning quasi-monte-carlo scientific-machine-learning sciml
Language:Julia 97
SciML / StructuralIdentifiability.jl
Fast and automatic structural identifiability software for ODE systems
differentialequations julia parameter-estimation structural-identifiability
Language:Julia 97
weijie-chen / Basic-Statistics-With-Python
Introduction to statistics featuring Python. This series of lecture notes aim to walk you through all basic concepts of statistics, such as descriptive statistics, parameter estimations, hypothesis testing, ANOVA and etc. All codes are straightforward to understand.
data-science mathematics econometrics frequentist-statistics probability parameter-estimation hypothesis-testing anova-analysis descriptive-statistics
Language:Jupyter Notebook 93
csu-hmc / opty
A library for using direct collocation in the optimization of dynamic systems.
python optimization collocation optimal optimal-control parameter-estimation
Language:Python 83
kjyv / FloBaRoID
Framework for dynamical system identification of floating-base rigid body tree structures
identification urdf dynamics-models excitation yarp measurements robotics parameter-estimation
Language:Python 61
SciML / DiffEqParamEstim.jl
Easy scientific machine learning (SciML) parameter estimation with pre-built loss functions
differentialequations estimation parameter-estimation differential-equations neural-ode scientfic-ml scientific-ai ode sde dae dde ordinary-differential-equations stochastic-differential-equations differential-algebraic-equations
Language:Julia 60
Data2Dynamics / d2d
a modeling environment tailored to parameter estimation in dynamical systems
modeling matlab systems-biology computational-biology parameter-estimation model-calibration
Language:MATLAB 55
PEtab
PEtab-dev / PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
systems-biology parameter-estimation sbml-model data-format sbml combine-archive modelling hacktoberfest
54
sdu-cfei / modest-py
FMI-compliant Model Estimation in Python
fmi fmu optimization parameter-estimation genetic-algorithm pattern-search
Language:Python 47
xpsi-group / xpsi
X-PSI: X-ray Pulse Simulation and Inference
astrophysics astronomy astronomical-algorithms astrophysical-simulation sampling parameter-estimation statistics-modeling modeling likelihood-functions posterior-sampling x-ray-astronomy
Language:Python 34
welltestpy
GeoStat-Framework / welltestpy
A python-package for handling well based field campaigns.
field-campaigns python parameter-estimation transmissivity
Language:Python 33
fededc88 / Li-Ion-Battery-Model-parameters-estimator
Semi-Automatic Li Ion battery RC model parameters estimator
matlab simulation li-ion-battery parameter-estimation
Language:MATLAB 30
pmocz / mcmc-python
Create Your Own Metropolis-Hastings Markov Chain Monte Carlo Algorithm for Bayesian Inference (With Python)
astrophysics bayesian-statistics markov-chain mcmc parameter-estimation radial-velocities scientific-computing stochastic-optimization tutorial
Language:Python 30
ICB-DCM / PESTO
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
parameter-estimation optimization matlab uncertainty-quantification profile-likelihood systems-biology
Language:MATLAB 26
GarrettJenkinson / informME
An information-theoretic pipeline for methylation analysis of WGBS data
bash bioinformatics cpp information-theory ising-model matlab methylation next-generation-sequencing parallel-computing parameter-estimation r sge slurm
Language:MATLAB 25
iliailmer / ParameterEstimation.jl
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
dynamical-systems julia julia-language mathematica-software mathematical-biology numerical-methods ode-model ordinary-differential-equations parameter-estimation parameter-identifiability symbolic-computation symbolic-numeric-computing
Language:Julia 25
biomass
biomass-dev / biomass
A Python Framework for Modeling and Analysis of Signaling Systems
python systems-biology computational-biology simulation kinetic-modeling parameter-estimation ode biochemical-networks dynamical-systems ordinary-differential-equations systems-biology-simulation modeling optimization network-analysis
Language:Python 24
Benchmarking-Initiative / Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
sbml petab systems-biology parameter-estimation benchmarking
Language:Python 23
SticsRPacks / CroptimizR
A package for parameter estimation, uncertainty / sensitivity analysis for crop models
crop-model parameter-estimation sensitivity-analysis uncertainty-analysis
Language:R 23
CliMA / ParameterEstimocean.jl
🎲 Parameter estimation for Oceananigans using EnsembleKalmanProcesses
julia ocean-modelling turbulence-models turbulence-closures machine-learning parameter-estimation climate-science
Language:Julia 20
parPE
ICB-DCM / parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
parameter-estimation optimization systems-biology dynamical-modeling high-performance-computing amici petab sbml hacktoberfest ode
Language:C++ 19
asanet / chemeng-solved
Classic problems in chemical engineering solved with matlab
mit-license matlab chemical-engineering mpc-control differential-equations numerical-methods optimization parameter-estimation process-control orthogonal collocation templates discretization collocation-method differential-algebraic-equations
Language:MATLAB 18
DanielVandH / ProfileLikelihood.jl
Methods for profile likelihood analysis.
confidence-intervals likelihood optimization parameter-estimation statistics
Language:Julia 17
ma921 / SOBER
Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration
bayesian-inference bayesian-optimization bayesian-quadrature blackbox-optimization drug-discovery quadrature simulation-based-inference global-optimization machine-learning optimization parameter-estimation
Language:Jupyter Notebook 17