parameter-estimation

There are 8 repositories under parameter-estimation topic.

casadi / casadi
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.
optimization nonlinear derivatives code-generation numerical-calculations academic-project scientific-computing mathematics symbolic-manipulation parameter-estimation optimal-control modular matlab octave python c-plus-plus library algorithmic-differentation nonlinear-programming
Language:C++ 2002
sbi-dev / sbi
sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.
simulation-based-inference likelihood-free-inference bayesian-inference parameter-estimation pytorch machine-learning
Language:Python 727
bayesflow-org / bayesflow
A Python library for amortized Bayesian workflows using generative neural networks.
deep-learning amortized-inference bayesian-statistics computational-modeling generative-ai generative-models neural-networks simulation-based-inference
Language:Python 604
pyPESTO
ICB-DCM / pyPESTO
python Parameter EStimation TOolbox
hacktoberfest optimization parameter-estimation python systems-biology
Language:Python 261
pints-team / pints
Probabilistic Inference on Noisy Time Series
bayesian-methods inverse-problems parameter-estimation numerical-optimization
Language:Python 239
undark-lab / swyft
A system for scientific simulation-based inference at scale.
likelihood-free-inference simulation-based-inference marginal-neural-ratio-estimation neural-ratio-estimation machine-learning parameter-estimation python pytorch truncated-neural-ratio-estimation
Language:Jupyter Notebook 163
usgs / pestpp
tools for scalable and non-intrusive parameter estimation, uncertainty analysis and sensitivity analysis
uncertainty-quantification parameter-estimation ensembles optimization-tools optimization sensitivity-analysis global-sensitivity-analysis parallel-computing non-intrusive ensemble-methods
Language:C++ 157
openmole / openmole
Workflow engine for exploration of simulation models using high throughput computing
scala workflow modeling-tool distributed-computing parameter-search scientific-computing workflow-engine grid parameter-tuning parameter-estimation egi dirac hyperparameters
Language:Scala 144
ControlSystemIdentification.jl
baggepinnen / ControlSystemIdentification.jl
System Identification toolbox, compatible with ControlSystems.jl
estimation transfer-function-estimation identification arx system-identification control-systems dynamical-systems spectral-analysis state-space-systems lti-system coherence time-series-analysis time-series subspace-identification n4sid frequency-response kalman-filter controls parameter-estimation
Language:Julia 141
LowLevelParticleFilters.jl
baggepinnen / LowLevelParticleFilters.jl
State estimation, smoothing and parameter estimation using Kalman and particle filters.
particle-filter kalman-filter estimation state-estimation control-systems dynamical-systems sequential-monte-carlo bayesian-inference system-identification monte-carlo-methods unscented-kalman-filter extended-kalman-filter parameter-estimation prediction-error-method data-assimilation controls virtual-sensing gnss guidance-navigation-control tracking
Language:Julia 126
AMICI
AMICI-dev / AMICI
High-performance sensitivity analysis for large ordinary differential equation models
adjoint-sensitivities cvode cvodes differentialequations forward-sensitivities hacktoberfest idas kinetic-modeling mechanistic-models modeling ode parameter-estimation petab pysb python sbml sensitivities sensitivity-analysis simulation systemsbiology
Language:C++ 125
SciML / StructuralIdentifiability.jl
Fast and automatic structural identifiability software for ODE systems
structural-identifiability julia differentialequations parameter-estimation
Language:Julia 116
weijie-chen / Basic-Statistics-With-Python
Introduction to statistics featuring Python. This series of lecture notes aim to walk you through all basic concepts of statistics, such as descriptive statistics, parameter estimations, hypothesis testing, ANOVA and etc. All codes are straightforward to understand.
data-science mathematics econometrics frequentist-statistics probability parameter-estimation hypothesis-testing anova-analysis descriptive-statistics
Language:Jupyter Notebook 115
SciML / QuasiMonteCarlo.jl
Lightweight and easy generation of quasi-Monte Carlo sequences with a ton of different methods on one API for easy parameter exploration in scientific machine learning (SciML)
sciml scientific-machine-learning physics-informed-learning quasi-monte-carlo parameter-estimation julia
Language:Julia 107
csu-hmc / opty
A library for using direct collocation in the optimization of dynamic systems.
python optimization collocation optimal optimal-control parameter-estimation
Language:Python 104
madsjulia / Mads.jl
MADS: Model Analysis & Decision Support
decision-support model-analysis calibration sensitivity-analysis uncertainty-quantification decision-making model-reduction machine-learning blind-source-separation inversion parameter-estimation high-performance-computing matrix-factorization data-analytics
Language:HTML 103
kjyv / FloBaRoID
Framework for dynamical system identification of floating-base rigid body tree structures
identification urdf dynamics-models excitation yarp measurements robotics parameter-estimation
Language:Python 68
PEtab
PEtab-dev / PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
combine-archive data-format hacktoberfest modelling parameter-estimation sbml sbml-model systems-biology
60
SciML / DiffEqParamEstim.jl
Easy scientific machine learning (SciML) parameter estimation with pre-built loss functions
differentialequations estimation parameter-estimation differential-equations neural-ode scientfic-ml scientific-ai ode sde dae dde ordinary-differential-equations stochastic-differential-equations differential-algebraic-equations
Language:Julia 60
Data2Dynamics / d2d
a modeling environment tailored to parameter estimation in dynamical systems
modeling matlab systems-biology computational-biology parameter-estimation model-calibration
Language:MATLAB 59
sdu-cfei / modest-py
FMI-compliant Model Estimation in Python
fmi fmu optimization parameter-estimation genetic-algorithm pattern-search
Language:Python 52
fededc88 / Li-Ion-Battery-Model-parameters-estimator
Semi-Automatic Li Ion battery RC model parameters estimator
li-ion-battery matlab parameter-estimation simulation
Language:MATLAB 45
pmocz / mcmc-python
Create Your Own Metropolis-Hastings Markov Chain Monte Carlo Algorithm for Bayesian Inference (With Python)
astrophysics bayesian-statistics markov-chain mcmc parameter-estimation radial-velocities scientific-computing stochastic-optimization tutorial
Language:Python 41
xpsi-group / xpsi
X-PSI: X-ray Pulse Simulation and Inference
astrophysics astronomy astronomical-algorithms astrophysical-simulation sampling parameter-estimation statistics-modeling modeling likelihood-functions posterior-sampling x-ray-astronomy
Language:Python 37
welltestpy
GeoStat-Framework / welltestpy
A python-package for handling well based field campaigns.
field-campaigns python parameter-estimation transmissivity
Language:Python 35
Benchmarking-Initiative / Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
benchmarking parameter-estimation petab sbml systems-biology
Language:Python 29
biomass
biomass-dev / biomass
A Python Framework for Modeling and Analysis of Signaling Systems
python systems-biology computational-biology simulation kinetic-modeling parameter-estimation ode biochemical-networks dynamical-systems ordinary-differential-equations systems-biology-simulation modeling optimization network-analysis
Language:Python 29
SticsRPacks / CroptimizR
Estimate Crop Models' parameters
crop-model uncertainty-analysis sensitivity-analysis parameter-estimation
Language:R 28
iliailmer / ParameterEstimation.jl
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
julia-language numerical-methods ode-model parameter-estimation symbolic-computation parameter-identifiability symbolic-numeric-computing dynamical-systems julia mathematical-biology ordinary-differential-equations mathematica-software
Language:MATLAB 27
MichaelBarclift / Additive-Manufacturing
A curated list of Additive Manufacturing literature, research papers, and presentations that are publicly available and related to Laser Powder Bed Fusion and Metal Binder Jetting processes.
3d-printing additive-manufacturing 3d-cad manufacturing topology-optimization design heat-transfer parameter-estimation process-development cost-model materials-science engineering
27
ICB-DCM / PESTO
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
parameter-estimation optimization matlab uncertainty-quantification profile-likelihood systems-biology
Language:MATLAB 26
GarrettJenkinson / informME
An information-theoretic pipeline for methylation analysis of WGBS data
bioinformatics methylation matlab cpp bash r next-generation-sequencing ising-model information-theory sge parameter-estimation parallel-computing slurm
Language:MATLAB 25
ma921 / SOBER
Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration
bayesian-inference bayesian-optimization bayesian-quadrature blackbox-optimization drug-discovery global-optimization machine-learning optimization parameter-estimation quadrature simulation-based-inference
Language:Jupyter Notebook 25
SMI
NYU-DiffusionMRI / SMI
Toolbox for parameter estimation of the Standard Model of diffusion in white matter
diffusion-mri biophysical-modeling parameter-estimation machine-learning
Language:MATLAB 23
susantoj / Moto
Induction motor parameter estimation tool
python power-systems-analysis induction-motors parameter-estimation
Language:Python 22
joelnmdyer / sbi4abm
Black-box Bayesian inference for agent-based models
agent-based-modeling bayesian-inference calibration-toolbox parameter-estimation
Language:Python 21