parameter-estimation

There are 8 repositories under parameter-estimation topic.

casadi / casadi
CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.
optimization nonlinear derivatives code-generation numerical-calculations academic-project scientific-computing mathematics symbolic-manipulation parameter-estimation optimal-control modular matlab octave python c-plus-plus library algorithmic-differentation nonlinear-programming
Language:C++ 2040
sbi-dev / sbi
sbi is a Python package for simulation-based inference, designed to meet the needs of both researchers and practitioners. Whether you need fine-grained control or an easy-to-use interface, sbi has you covered.
bayesian-inference likelihood-free-inference machine-learning parameter-estimation pytorch simulation-based-inference
Language:Python 750
pyPESTO
ICB-DCM / pyPESTO
python Parameter EStimation TOolbox
parameter-estimation optimization systems-biology python hacktoberfest
Language:Python 262
Laka-3DV / TurboReg
[ICCV-2025] TurboReg: TurboClique for Robust and Efficient Point Cloud Registration
iccv iccv2025 lidar lidar-point-cloud lidar-slam parameter-estimation pcr point-cloud point-cloud-registration pointcloud-registration pytorch ransac registration rgbd-slam robust-estimation
Language:C++ 239
pints-team / pints
Probabilistic Inference on Noisy Time Series
bayesian-methods inverse-problems numerical-optimization parameter-estimation
Language:Python 239
undark-lab / swyft
A system for scientific simulation-based inference at scale.
likelihood-free-inference machine-learning marginal-neural-ratio-estimation neural-ratio-estimation parameter-estimation python pytorch simulation-based-inference truncated-neural-ratio-estimation
Language:Jupyter Notebook 164
usgs / pestpp
tools for scalable and non-intrusive parameter estimation, uncertainty analysis and sensitivity analysis
ensemble-methods ensembles global-sensitivity-analysis non-intrusive optimization optimization-tools parallel-computing parameter-estimation sensitivity-analysis uncertainty-quantification
Language:C++ 162
ControlSystemIdentification.jl
baggepinnen / ControlSystemIdentification.jl
System Identification toolbox, compatible with ControlSystems.jl
arx coherence control-systems controls dynamical-systems estimation frequency-response identification kalman-filter lti-system n4sid parameter-estimation spectral-analysis state-space-systems subspace-identification system-identification time-series time-series-analysis transfer-function-estimation
Language:Julia 149
openmole / openmole
Workflow engine for exploration of simulation models using high throughput computing
dirac distributed-computing egi grid hyperparameters modeling-tool parameter-estimation parameter-search parameter-tuning scala scientific-computing workflow workflow-engine
Language:Scala 146
LowLevelParticleFilters.jl
baggepinnen / LowLevelParticleFilters.jl
State estimation, smoothing and parameter estimation using Kalman and particle filters.
bayesian-inference control-systems controls data-assimilation dynamical-systems estimation extended-kalman-filter gnss guidance-navigation-control kalman-filter monte-carlo-methods parameter-estimation particle-filter prediction-error-method sequential-monte-carlo state-estimation system-identification tracking unscented-kalman-filter virtual-sensing
Language:Julia 141
AMICI
AMICI-dev / AMICI
High-performance sensitivity analysis for large ordinary differential equation models
differentialequations sensitivities simulation adjoint-sensitivities forward-sensitivities sbml systemsbiology cvode python kinetic-modeling mechanistic-models sensitivity-analysis cvodes idas pysb petab ode parameter-estimation hacktoberfest modeling
Language:C++ 127
weijie-chen / Basic-Statistics-With-Python
Introduction to statistics featuring Python. This series of lecture notes aim to walk you through all basic concepts of statistics, such as descriptive statistics, parameter estimations, hypothesis testing, ANOVA and etc. All codes are straightforward to understand.
data-science mathematics econometrics frequentist-statistics probability parameter-estimation hypothesis-testing anova-analysis descriptive-statistics
Language:Jupyter Notebook 126
SciML / StructuralIdentifiability.jl
Fast and automatic structural identifiability software for ODE systems
structural-identifiability julia differentialequations parameter-estimation
Language:Julia 125
csu-hmc / opty
A library for using direct collocation in the optimization of dynamic systems.
python optimization collocation optimal optimal-control parameter-estimation
Language:Python 117
SciML / QuasiMonteCarlo.jl
Lightweight and easy generation of quasi-Monte Carlo sequences with a ton of different methods on one API for easy parameter exploration in scientific machine learning (SciML)
sciml scientific-machine-learning physics-informed-learning quasi-monte-carlo parameter-estimation julia
Language:Julia 117
madsjulia / Mads.jl
MADS: Model Analysis & Decision Support
decision-support model-analysis calibration sensitivity-analysis uncertainty-quantification decision-making model-reduction machine-learning blind-source-separation inversion parameter-estimation high-performance-computing matrix-factorization data-analytics
Language:HTML 105
kjyv / FloBaRoID
Framework for dynamical system identification of floating-base rigid body tree structures
dynamics-models excitation identification measurements parameter-estimation robotics urdf yarp
Language:Python 68
SciML / DiffEqParamEstim.jl
Easy scientific machine learning (SciML) parameter estimation with pre-built loss functions
differentialequations estimation parameter-estimation differential-equations neural-ode scientfic-ml scientific-ai ode sde dae dde ordinary-differential-equations stochastic-differential-equations differential-algebraic-equations
Language:Julia 62
Data2Dynamics / d2d
a modeling environment tailored to parameter estimation in dynamical systems
modeling matlab systems-biology computational-biology parameter-estimation model-calibration
Language:MATLAB 61
PEtab
PEtab-dev / PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
systems-biology parameter-estimation sbml-model data-format sbml combine-archive modelling hacktoberfest
60
sdu-cfei / modest-py
FMI-compliant Model Estimation in Python
fmi fmu optimization parameter-estimation genetic-algorithm pattern-search
Language:Python 52
fededc88 / Li-Ion-Battery-Model-parameters-estimator
Semi-Automatic Li Ion battery RC model parameters estimator
li-ion-battery matlab parameter-estimation simulation
Language:MATLAB 47
pmocz / mcmc-python
Create Your Own Metropolis-Hastings Markov Chain Monte Carlo Algorithm for Bayesian Inference (With Python)
astrophysics bayesian-statistics markov-chain mcmc parameter-estimation radial-velocities scientific-computing stochastic-optimization tutorial
Language:Python 43
xpsi-group / xpsi
X-PSI: X-ray Pulse Simulation and Inference
astrophysics astronomy astronomical-algorithms astrophysical-simulation sampling parameter-estimation statistics-modeling modeling likelihood-functions posterior-sampling x-ray-astronomy
Language:Python 42
welltestpy
GeoStat-Framework / welltestpy
A python-package for handling well based field campaigns.
field-campaigns python parameter-estimation transmissivity
Language:Python 37
MichaelBarclift / Additive-Manufacturing
A curated list of Additive Manufacturing literature, research papers, and presentations that are publicly available and related to Laser Powder Bed Fusion and Metal Binder Jetting processes.
3d-printing additive-manufacturing 3d-cad manufacturing topology-optimization design heat-transfer parameter-estimation process-development cost-model materials-science engineering
34
biomass
biomass-dev / biomass
A Python Framework for Modeling and Analysis of Signaling Systems
python systems-biology computational-biology simulation kinetic-modeling parameter-estimation ode biochemical-networks dynamical-systems ordinary-differential-equations systems-biology-simulation modeling optimization network-analysis
Language:Python 30
iliailmer / ParameterEstimation.jl
ParameterEstimation.jl is a Julia package for estimating parameters and initial conditions of ODE models given measurement data.
dynamical-systems julia julia-language mathematica-software mathematical-biology numerical-methods ode-model ordinary-differential-equations parameter-estimation parameter-identifiability symbolic-computation symbolic-numeric-computing
Language:MATLAB 30
Benchmarking-Initiative / Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
benchmarking parameter-estimation petab sbml systems-biology
Language:Python 29
ma921 / SOBER
Fast Bayesian optimization, quadrature, inference over arbitrary domain with GPU parallel acceleration
bayesian-inference bayesian-optimization bayesian-quadrature blackbox-optimization drug-discovery quadrature simulation-based-inference global-optimization machine-learning optimization parameter-estimation
Language:Jupyter Notebook 29
SticsRPacks / CroptimizR
Estimate Crop Models' parameters
crop-model uncertainty-analysis sensitivity-analysis parameter-estimation
Language:R 28
msainsburydale / NeuralEstimators.jl
Julia package for neural estimation
deep-learning likelihood-free likelihood-free-inference parameter-estimation statistics simulation-based-inference
Language:Julia 27
SMI
NYU-DiffusionMRI / SMI
Toolbox for parameter estimation of the Standard Model of diffusion in white matter
biophysical-modeling diffusion-mri machine-learning parameter-estimation
Language:MATLAB 27
ICB-DCM / PESTO
PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
parameter-estimation optimization matlab uncertainty-quantification profile-likelihood systems-biology
Language:MATLAB 26
GarrettJenkinson / informME
An information-theoretic pipeline for methylation analysis of WGBS data
bioinformatics methylation matlab cpp bash r next-generation-sequencing ising-model information-theory sge parameter-estimation parallel-computing slurm
Language:MATLAB 24
joelnmdyer / sbi4abm
Black-box Bayesian inference for agent-based models
agent-based-modeling bayesian-inference calibration-toolbox parameter-estimation
Language:Python 24