fluxomics

There are 0 repository under fluxomics topic.

MetaSys-LISBP / IsoCor
IsoCor: Isotope Correction for mass spectrometry labeling experiments
ms-data isotope-labeling-experiments isotope mass-spectrometry metabolomics isotope-correction fluxomics 13c-mfa metabolic-flux-analysis correction-natural-abundance isotopologue-distribution isotopic-inchi
Language:Python 24
EMSL-NMR-EPR / Haskell-MFAPipe-Executable
Open source software for parallel labeling, steady state metabolic flux analysis
mfa fba fluxomics metabolomics emu isotopomer cumomer
Language:Haskell 7
MetaSys-LISBP / PhysioFit
Estimation of extracellular fluxes and growth rate
metabolism metabolic-flux-analysis exometabolome extracellular-fluxes exchange-fluxes metabolic-models systems-biology fluxomics mass-spectrometry nuclear-magnetic-resonance isotope-labeling-experiments biotechnology synthetic-biology
Language:Python 7
ISA-tools / MSIO
Metabolomics Standards Initiative Ontology
metabolomics fluxomics mass-spectrometry nmr-spectroscopy data-science data-sharing
Language:Java 5
MetaSys-LISBP / acetate_regulation
Kinetic modeling of glucose and acetate metabolisms in E. coli
systems-biology metabolic-models metabolic-flux-analysis isotope-labeling-experiments 13c-fluxomics metabolomics escherichia-coli fluxomics dynamical-systems dynamical-modeling kinetic-modeling regulation metabolic-control copasi acetate-overflow metabolism metabolic-network
Language:Component Pascal 5
MetaSys-LISBP / IsoSolve
Integration of isotopic measurements
isotope-labeling-experiments fluxomics isotopologue isotopomer cumomer elementary-metabolite-unit systems-biology ms nmr metabolomics
Language:Python 4
MetaSys-LISBP / IsoSolve_notebook
Showcase IsoSolve
metabolomics fluxomics nmr mass-spectrometry isotope-labeling-experiments isotopologue isotopomer cumomer emu systems-biology
Language:HTML 3
shyamsrinivasan / ident
Perform identifiability analysis in small kinetic models for experimental design using steady state fluxes and concentrations.
kinetic-modeling parameter-estimation metabolic-models experimental-design fluxomics metabolomics-data
Language:Jupyter Notebook 3
MetaSys-LISBP / IsoQ
Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry
metabolomics fluxomics 13c-mfa mass-spectrometry isotopologue-distribution metabolic-flux-analysis isotope-labeling-experiments ms-data isotope
Language:Python 2
sriram-lab / metabolicmodeling
Constraint-based metabolic modeling software from the Chandrasekaran Lab
constraint-based-modeling genome-scale-modeling matlab python omics-data-integration fluxomics
Language:HTML 2
ammahmoudi / Fluxomic-Prediction
Applying implicit deep learning and convex optimization layers to infer metabolic fluxes from gene expression data
bioinformatics deep-neural-networks fluxomics ml optimization transcriptomics
Language:Jupyter Notebook 1
Constellab / gws_gena
Constellab brick for genome-scale metabolic modelling
cobra constellab fba fluxomics gencovery metabolomics network pathway-analysis
Language:Python 0
pierremillard / glucose_acetate_interplay
Supplementary information of Millard et al. 2022
acetate acetate-overflow control escherichia-coli fluxomics glucose kinetic-modeling metabolism regulation systems-biology
Language:HTML 0
MetaSys-LISBP / pseudomonas_metabolic_burden
Flux response of Pseudomonas putida to increased levels of metabolic burden
13c-mfa fluxomics metabolic-models protein-production pseudomonas-putida metabolic-burden biotechnology
Language:R