biosimulators
There are 1 repository under biosimulators topic.
EBI-BioModels / SBO
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
- Biosimulators_test_suite
biosimulators / Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Language:Python 7 - Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
Language:Python 5 - Biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
Language:Python 4 - Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 2 - Biosimulators_tutorials
Tutorials for BioSimulators
Language:Jupyter Notebook 2 - biosimulations-bigg
biosimulations / biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Language:Python 1 - Biosimulators_BioNetGen
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python 1 - biosimulators.github.io
Summary of the technical documentation for BioSimulators
Language:Python 0 - Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python - Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python - Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python - Biosimulators_iBioSim
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python - Biosimulators_LibSBMLSim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language:C - Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python - Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language:Python