MetaSys team (Toulouse Biotechnology Institute)

MetaSys team (Toulouse Biotechnology Institute)'s repositories

IsoCor

IsoCor: Isotope Correction for mass spectrometry labeling experiments

Language:PythonGPL-3.024 4 20

PhysioFit

Estimation of extracellular fluxes and growth rate

Language:PythonGPL-3.07 3 2

IsoSim

IsoSim: stoichiometric, kinetic and isotopic modeling of metabolic systems

Language:RGPL-3.06 4 1

acetate_regulation

Kinetic modeling of glucose and acetate metabolisms in E. coli

Language:Component PascalGPL-3.05 20

IsoSolve

Integration of isotopic measurements

Language:PythonNOASSERTION4 20

IsoSolve_notebook

Showcase IsoSolve

Language:HTMLAGPL-3.03 20

IsoQ

Simultaneous measurement of absolute metabolite concentration and isotope incorporation by mass spectrometry

Language:PythonGPL-3.02 20

GL_GNT_bypass

13C metabolic flux analysis of the extracellular GL-GNT by-pass of E. coli

Language:Component PascalGPL-3.01 10

Interact

Analysis of 1D and 2D NMR titration experiments.

Language:PythonGPL-3.01 20

zerter

Extract signals from J-resolved NMR spectra (Cox et al., 2020)

Language:PythonGPL-3.01 20

FindPath

Language:MATLAB020

glucose_acetate_interplay

Supplementary information of Millard et al. 2023

Language:HTMLGPL-3.0000

KinetX

Supplementary code of Cox et al., 2019

Language:Python020

Peiro_2019

Supplementary code of Peiro et al., 2019

Language:RGPL-3.0020

ethanolamine_metabolism

Ethanolamine metabolism of E. coli

Language:Component PascalGPL-3.0000

in_vivo_enzymatic_parameters

In vivo analysis of enzymatic parameters

Language:Jupyter NotebookGPL-3.0000

PhysioFit4Galaxy

Maintainance of the Physiofit package for the W4M Galaxy instance

Language:PythonGPL-3.0000

pseudomonas_metabolic_burden

Flux response of Pseudomonas putida to increased levels of metabolic burden

Language:RGPL-3.0010