There are 16 repositories under bioinformatics-data topic.
d3 library to build circular graphs
Curated list of bioinformatics formats and publications
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Manuscript describing ChronQC is now available online in Bioinformatics
Datastores for reads, not your papa's FASTQ files.
Services and guidelines for normalizing drug and other therapy terms
Code examples for working with web based bioinformatics APIs
Repository of Jupyter Notebooks created by the Bio2Byte group
Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.
Supplemental material for the paper "Facilitating Prediction of Adverse Drug Reactions by Using Knowledge Graphs and Multi-Label Learning Models".
implementation of BurrowsβWheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
A data visualization tool to display tissue expression data for Arabidopsis thaliana
Reproducible and reusable test data for bioinformatics projects.
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
Binning biological data tracks and producing RDS containing data.tables
Produces a network of given microbiome data
A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.
ams939's Academy of Natural Sciences of Drexel University COOP 2018 code repository
A console application for the ration calculation of amino acids from a PDB file.
Tools for working with the Seven Bridges bioinformatics platform.
A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.
Materials for course about processing HybSeq data on computing grids
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
Export metadata from the DCP sheepdog API. ππ
An old Phylogenetik Project (2007) in JAVA, with (some) phylogeny, bioinformatics algorithms, matrix implementations and comparisons, PAM and BLOSUM (extract from http://gabriel.chandesris.free.fr/projets/Phylogenetik/ )
Fluorescence dilution/proliferation assay toolkit in R π¬π
A python solution towards classifying different protein-protein interactions among Protein Sequences.
Contains a sample dataset with rehab sessions of stroke victims and data preparation example