arabidopsis-thaliana
There are 0 repository under arabidopsis-thaliana topic.
Gregor-Mendel-Institute / aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
Language:Nextflow 40- eFP-Seq_Browser
BioAnalyticResource / eFP-Seq_Browser
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Language:HTML 12 - ePlant_Plant_eFP
A data visualization tool to display tissue expression data for Arabidopsis thaliana
Language:JavaScript 3 fran-romero-campero / BRC1NET
A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.
Language:R 3grassking100 / deep_gene_annotator
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
Language:Python 3A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.
Language:R 3chandlersutherland / nlr_features
Scripts associated with understanding the genomic features of NLRs in Arabidopsis thaliana Col-0
Language:Jupyter Notebook 2Arabidopsis Thaliana TRanscriptionAl Circadian neTwORk, a web based tool developed using the R package shiny for the exploration and analysis of a transcriptional network in Arabidopsis thaliana constituted by circadian and light responsive transcriptional factors and regulators
Language:R 2grimmlab / phenotype_prediction
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
Language:Jupyter Notebook 2matz2532 / SAM_division_prediction
Division event and resulting topological changes prediction of Arabidopsis thaliana shoot apical and floral meristems
Language:Python 2pwendering / model-prm
Constraint-based modeling of photorespiratory mutants using metabolomics in TMFA
Language:MATLAB 2- Language:Jupyter Notebook 1
Sweekwang / golabel
A website to explore biological relationships between Arabidopsis thailiana genetic characteristics.
Language:JavaScript 1vivek37373 / lncFETCHER
Bioinformatics pipeline for lncRNA prediction in Arabiodpsis thaliana
Language:Shell 1AAnzel / Master_thesis
Repo containing the practical part of my Master's Thesis (in Serbian)
Language:HTML 0ARNTET / Plant_organellar_DNA_recombination
Study recombination of the Arabidopsis thaliana radA mutant on cpDNA
Language:R 0camilababo / BIONIC
This repository contains MSc thesis results using BIONIC (developed by Duncan Forster at The University of Toronto) for the prediction of Arabidopsis's temperature-responsive gene modules.
Language:Jupyter Notebook 0mabarbour / genes-to-foodweb-stability
This repository contains data and code to reproduce analyses reported in the manuscript, "A keystone gene underlies the persistence of an experimental food web".
Language:R 0Platform for further development of the Arabidopsis core metabolic model
Language:MATLAB 0Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
Language:MATLAB 0Renee-Napoliello / Transcriptomic-Analysis-Arabidopsis-MPBF1c-Knockout
Analysis of transcriptomic dataset of A. thaliana Multi Protein Bridging Factor 1c knockout
Language:Jupyter Notebook 0- 0
gauravcodepro / arabidopsis-api-tair
easing your access to arabidopsis tair
Language:Pythonarabidopsis-maf-cap-accessions. genome extraction, alignments, visualization, phylogenomics, ancestral tree
Language:HTMLnschan / nf-arassembly
Nextflow pipeline to assemble genomes from nanopore reads.
Language:Nextflowsivkri / gene-id-retrieval-from-TAIR
Gene ID Retrieval from TAIR: R code to retrieve gene IDs from TAIR (The Arabidopsis Information Resource) and export them as CSV files
Language:R- Language:Python
