phylogenetic-data

There are 0 repository under phylogenetic-data topic.

lczech / gappa
A toolkit for analyzing and visualizing phylogenetic (placement) data
c-plus-plus evolutionary-placement gappa genesis phylogenetic-data phylogenetic-placement phylogenetics placement
Language:C++ 57
lczech / genesis
A library for working with phylogenetic and population genetic data.
c-plus-plus evolutionary-placement phylogenetic-data phylogenetic-placements phylogenetic-trees phylogenetics placement pool-sequencing population-genetics
Language:C++ 56
kingaa / ouch
Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
phylogenetic-comparative-hypotheses phylogenetic-data ornstein-uhlenbeck ornstein-uhlenbeck-models ouch react phylogenetic-comparative-methods brownian-motion adaptive-regime
Language:R 15
btmartin721 / raxml_ascbias
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
raxml phylogenetics phylogenetic-data phylogenetic-analysis ascertainment-bias correction dna-sequences dna-sequence-analysis filtering sequence-alignment variant-sites invariant-sites lewis felsenstein stamatkis
Language:Python 13
hansiu / MatPhylobi
a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
phylogenetics phylogenetic-analysis phylogenetic-data supermatrix-phylogenetic-analyses supermatrix genbank tool molecular-markers
Language:Python 4
AKU-CITRIC-Center-for-Bioinformatics / ncov
Genomic Epidemiology of SARS-CoV-2 in Pakistan
github nextflow yaml genomics epidemiology genomics-visualization epidemiology-analysis epidemiology-models pyhylodynamics phylogenetics phylosurveillance phylogenomics phylogenetic-analysis phylogenetic-data phylogenetic-trees phylogeography phylogenomics-pipeline
3
bioinfweb / JPhyloIO
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
bioinformatics-data phylogenetics io phylogenetic-data nexus nexml phyloxml newick bioinformatics metadata library
Language:Java 1
sophiagosselin / tANI_tool
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
average-nucleotide-identity phylogenetic-data phylogenetic-tree whole-genome-distance
Language:Perl 1
carrineblank / MicroPIEDigester
Converts raw phenotypic character information generated by MicroPIE into a coded character matrix (nexus file).
character-matrix phenomic phylogenetic-data character-states microbiology bioinformatics-scripts
Language:Perl 0
eascarrunz / sokalize
Transform multistate characters to binary characters in NEXUS character matrices
biology phylogenetic-data character-matrix converter
Language:Python 0
NIH-BIGVI-PAKISTAN / ncov
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
nextstrain-ncov pakistan-analysis phylodynamics phylogenetic-data phylogenetics phylogeography
0
VoSeq / VoSeq
:evergreen_tree: VoSeq is a database to store voucher and sequence data
science phylogenetic-data dna-sequences
Language:Python 0