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Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
Parse illumina MiSeq SampleSheet.csv files and convert to JSON
These scripts were used to bioinformatically process the NGS data associated with the manuscript entitled "Illuminating the bacterial microbiome of Australian ticks from companion animals with next-generation sequencing", authored by Telleasha L. Greay, Kimberly L. Evasco, Megan L. Evans, Paola Magni, Una M. Ryan and Peter J. Irwin. The raw data is deposited in NCBI's sequence read archive under the accession PRJNA640465. Please visit my website and contact me if you want to do a similar analysis and need help.
TFM_AliciaAranda_Pipeline
genome assembler for cleaning, mapping and assembling genomes.