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A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Clann: constructing consensus trees and supertrees from multiple source trees
NGSphy: phylogenomic simulation of next-generation sequencing data
Species tree estimation from multi-copy gene trees
Two pipelines to perform phylogenomic analysis
Rooting species trees under the multi-species coalescent model
Coalescent-Aware Species Tree Length Estimation in Substitution-units
Species tree estimation from gene trees via weighted quartets
Materials for course about processing HybSeq data on computing grids
Datasets and scripts used in "Phylogenomic branch length estimation using quartets" paper
Datasets and scripts used in "Quintet Rooting: rooting species trees under the multi-species coalescent model" paper