akshayparopkari

RNAseq

Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data

2020-12-07-txstate-online

DC Carpentry workshop organized by Texas Digital Libraries (archived)

cut_run_analysis

An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.

kadambari

A collection of scripts.

2020-08-17-ucmerced

Carpentry workshop for GROW

akshayparopkari

My GitHub profile

akshayparopkari.github.io

My personal webpage

BiasAway

BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.

discover_tfbs

Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.

elcapitan-ansible

merced-cluster

Wiki and example on how to use the Merced Cluster.

Misc_bioinformatics

Stores scripts I commonly use during bioinformatic analysis so I don't have to dig through old code

phycorder

pipeline to place taxa in a phylogeny using NGS reads

phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

phylotoast-docs

Project documentation for QIIME-tools

planets

Learning Git and GitHub workflow

practice_scripts

Repo of practice scripts that may or may not be useful for various bioinformatic purposes

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

remote-jobs

A list of semi to fully remote-friendly companies in tech.

scikit-learn

scikit-learn: machine learning in Python

shell-genomics

Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget

three_circle_venn_diagram

Solving a three circle venn diagram word problem using pandas and matplotlib Python libraries

yfinance

Download market data from Yahoo! Finance's API