circos

There are 2 repositories under circos topic.

• pyCirclize

  moshi4 / pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  bioinformaticschord-diagramcircoscomparative-genomicsdata-visualizationdatavizgenomicsgenomics-visualizationmatplotlibmicrobial-genomicsphylogenetic-treespythonradar-chartvisualization
  Language:Python 845

• nicgirault / circosJS

  d3 library to build circular graphs

  big-databigdatabioinformaticsbioinformatics-datacircoscircos-graphscirculard3jsjavascript
  Language:JavaScript 518

• ponnhide / pyCircos

  python Circos

  biopythoncircoscircos-plotmatplotlibphylogenetic-treespythonvisualization
  Language:Python 352
• shinyCircos

  YaoLab-Bioinfo / shinyCircos

  an R/shiny application for creation of Circos plot interactively

  bioinformaticscircoscircos-graphsrshinyshiny-server
  Language:HTML 158

• YaoLab-Bioinfo / shinyCircos-V2.0

  an R/Shiny application for interactive creation of Circos plot

  circoscircos-plotrshiny
  Language:R 49
• MGCplotter

  moshi4 / MGCplotter

  Microbial Genome Circular plotting tool for comparative genomics using Circos

  bioinformaticscircoscomparative-analysiscomparative-genomicsgenomicsgenomics-visualizationmicrobial-genomicsmolecular-evolutionpythonvisualization
  Language:Python 38

• lvulliard / BioCircos.R

  Htmlwidgets binding R commands to the BioCircos.js library

  htmlwidgetsshinycircoscircos-graphsbiocircosbioinformatics
  Language:JavaScript 37

• chgibb / PHAT

  Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

  ngsalignmentvisualizationanalysispathogenhostnext-generation-sequencingcircoscircos-graphscircos-plotsnpsquality-controlbioinformaticsbioinformatics-analysisbioinformatics-tooldnaphatbambam-fileselectron
  Language:TypeScript 17

• jorgenunezsiri / accusyn

  AccuSyn: An Accurate Web-based Genome Synteny Browser

  syntenygeneticscomparative-genomicsbioinformaticsmcscanxsimulated-annealingheuristic-searchoptimizationjavascriptd3d3-visualizationreactcircoscircos-graphsdata-visualizationinformation-visualization
  Language:JavaScript 16

• biosustain / pyrcos

  Python wrapper for Circos

  visualizationcircos-graphspython-wrappergenomecircos
  Language:Python 12

• cedricbonhomme / IP-Link

  Visualizing the relationships between different IP from network traffic capture.

  securitynetwork-traffic-capturevisual-analysisvisualisationpcappythoncircos
  Language:Python 9

• kylase / CircosAPI

  API-style wrapper for Circos

  circosdata-visualizationperl
  Language:Perl 6 9

• philippmuench / Donut

  Donut: automated Circos visualization of multiple fasta files within a docker image

  circoscomparative-genomicsfastadocker-imagebioinformaticsgenome-annotation
  Language:Shell 9

• node / circos

  Mirror of cricos. "Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. "

  circosdatavisualization
  Language:Perl 8

• galaxy-genome-annotation / galaxy-circos-tool

  DEPRECATED: Merged into https://github.com/galaxyproject/tools-iuc/

  bioinformaticscircosusegalaxy
  Language:Python 6

• node / circos-cn

  Circos Tutorial Chinese Version Circos教程中文版 By Circos中文社区

  circosvisualizationdata-visualization
  6

• node / awesome-circos

  A curated list of amazingly awesome Circos resources

  awesomecircoscircos-graphscircos-plotawesome-listbioinformaticsdatavisualizationgenomicsgenomics-visualization
  5

• aislyn / TCR_circos

  R function to generate a circos-style ggplot from single-cell TCR data.

  tcrsinglecellcircosggplot2plotimmunogenomics
  Language:R 4

• AntoineHo / CircosAlignmentPlotter

  Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.

  circosbioinformaticsvisualizationalignmentpafbedminimap2genomicscircos-imageconvertsfasta-filesplotplottingcoveragedepthsequencesequencing
  Language:Python 3

• morinlab / tools-morinlab

  Galaxy Tool Shed repositories maintained and developed by the Morin Lab.

  cancergenomicsmutationsomatic-variantssomatic-mutationscopy-number-variationvisualizationcircos
  Language:Python 3

• paolopavan / circosFX

  Chord Diagram / Circos reimplementation in a JavaFX widget for GUI interface usage

  visualizachord-diagramcircosjavagui-interfacewidgetcircos-reimplementation
  Language:Java 3

• pathology-sandbox / flow_circos

  Basic functionality to create circos plot that shows concurrent positivity of flow cytometry markers.

  rflow-cytometrycircospathologyhemepathhematopathology
  Language:R 3

• pcantalupo / bam2circos

  Visualize your BAM alignments with Circos

  circosbambam-filesvisualization
  Language:Perl 3

• charlesli37 / covid-oph-dx-utils

  Online content for "Shifts in ophthalmic care utilization during the COVID-19 pandemic in the United States"

  biomedical-data-sciencecovid-19ophthalmologycircoshealthcare-utilisationhigh-dimensional-datahigh-dimensional-visualization
  1

• jamebluntcc / circos_plot

  利用jinja2快速生成circos plot

  pythonjinjia2circos
  Language:Python 1

• kylase / docker-circos

  Docker image for Circos

  circosdocker
  Language:Dockerfile 1

• epsalazarf / PopGenCircos

  Custom scripts for creating plots in Circos

  bioinformaticspopulation-geneticspopulation-genomicscircos
  Language:Python 0

• fg6 / forACT

  Pipeline to prepare alignments for visualization with ACT (goo.gl/1T28jX) and for locating possible inter-chromosomal re-arrengments/misjoints

  actalignmentassembliesbioinformaticsbioinformatics-analysischromosomecircoscontigsdnagenomeinter-chromosomesmappingminimap2misjointpipelinerearrengmentscaffoldsmaltsyntenyvisualization
  Language:C++ 0

• JAEYOONSUNG / GenomeDrawer

  Circos-based genome map visualization tool

  circosgenomevisualization
  Language:R 0

• magnumhell / analytics_watertreatment

  Data mining to predict operational outcome of a treatment plant

  rdatavisualizationcircosmachine-learning
  Language:R 0

• Rhylan2333 / pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart). Try adding the genomic label feature.

  circos
  Language:Python 0

• cuhk-haosun / code-template-circos

  Template for circos plot

  circoscodetemplate

• jnarayan81 / circosExtractor

  Extract the chromosomes of interest from noisy circos plot

  circosextractionplotdraw
  Language:Perl

• pritampanda15 / Visualization-Tools

  Bioinformatics tools for schematics, data analytics and visualization

  biorenderblendercircosi-pv
  Language:HTML