bioinformatics-visualization

There are 10 repositories under bioinformatics-visualization topic.

robotoD / GenoVi
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
bioinformatics-visualization visualization-tools genomics-visualization
Language:Python 98
aszilagyi / tabnetviz
Table-based network visualizer
bioinformatics-visualization command-line-tool cytoscape data-visualization edge-table graph-visualization graphviz network-visualization networks visual-attributes
Language:Python 21
biojs / biojs-frontend
Frontend repository for BioJS.
bioinformatics bioinformatics-visualization biojs genomics-visualization proteomics
Language:Vue 16
biojs / generator-biojs-webcomponents
Generate all the boilerplate for your next BioJS tool!
bioinformatics bioinformatics-visualization biojs genomics genomics-visualization proteomics webcomponents yeoman-generator
Language:JavaScript 10
boyinthebigcity / AFQuickPlot
Ready-to-go Jupyter notebook for plotting AlphaFold-generated MSAs, per-residue pLDDT, and PAE.
alphafold alphafold3 plotting-in-python bioinformatics-visualization pyplot
Language:Jupyter Notebook 7
fibrotime
slowkow / fibrotime
:tangerine: View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.
javascript rna-seq visualization differential-gene-expression plotlyjs vega-lite tabulator bioinformatics-visualization bioinformatics
Language:Jupyter Notebook 7
ePlant_Plant_eFP
BioAnalyticResource / ePlant_Plant_eFP
A data visualization tool to display tissue expression data for Arabidopsis thaliana
data data-visualization arabidopsis-thaliana bioinformatics bioinformatics-tool bioinformatics-data bioinformatics-visualization database arabidopsis
Language:JavaScript 6
BioinfoVisualization / pyVolcano
Volcano plot built over numpy, pandas and matplotlib
bioinformatics-visualization
Language:Jupyter Notebook 3
MagnusBertelsen / gmx_wheel_plus
gmx_wheel+ is a tool for analysing and visualizing the orientation of helical antimicobial peptides based on molecular dynamics simulations
antimicrobial-peptides bilayer bioinformatics-analysis bioinformatics-scripts bioinformatics-tool bioinformatics-visualization drug-design drug-discovery gromacs helix microbiology molecular-dynamics-simulation orientation-estimation peptides simulation
Language:Python 2
mr-eyes / genoFreq
summarize and visualize the genotypes categories per sample in a VCF file
vcf vcftools genotype genotype-data bioinformatics bioinformatics-tool bioinformatics-visualization variant-calling
Language:C++ 2
ZealousGeneticist / cartoflow
A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.
api bioinformatics bioinformatics-analysis bioinformatics-databases bioinformatics-pipeline bioinformatics-scripts bioinformatics-tool bioinformatics-visualization
Language:Python 2
cinnetcrash / Biyoinformatik_TR
Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-scripts bioinformatics-tool bioinformatics-visualization
Language:Shell 1
cinnetcrash.github.io
cinnetcrash / cinnetcrash.github.io
This repo contains my training materials for microbial bioinformatics
bioinformatics bioinformatics-pipeline bioinformatics-visualization microbiology
Language:HTML 1
microbAIDeR
FabbriniMarco / microbAIDeR
An ensemble of functions for easier and quicker preliminary microbiome analyses
bioinformatics bioinformatics-analysis bioinformatics-pipeline bioinformatics-tool bioinformatics-visualization biostatistics microbiome microbiome-analysis microbiota r microbiota-analysis
Language:R 1
mvfki / ggfla
GGPlot2 Extension for Fixed-Length Axis
bioinformatics-visualization ggplot-extension ggplot2 ggplot2-theme r-visualisation
Language:R 1
sidbdri / LAB-AID
LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments
visualization bioinformatics-visualization biology
Language:R 1
cbp44 / metaseqlite
A Python 3 compatible version of the major features of metaseq, a framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
metaseq bioinformatics bioinformatics-tool bioinformatics-visualization
Language:Python 0
DatViseR / Creating-explanatory-vulcano-plots-in-R-ggplot2-
This is a guide for creating informative and good looking vulcano plots for highthropout biological experiments with R ggplot2
r ggplot2 bioinformatics-visualization
Language:HTML 0
ifremer-bioinformatics / ifremer-bioinformatics.github.io
public web site of SeBiMER on Github
bioinformatics bioinformatics-tool bioinformatics-visualization
Language:JavaScript 0
MeenaEaswaran / BMI-6313-Scientific-Writing-in-Healthcare
This repository showcases bioinformatics analysis and visualization results from an independent project for a scientific writing course, utilizing iDEP and a microarray dataset derived from NCBI GEO.
differential-expression exploratory-data-analysis gene-ontology idep kegg-pathway limma microarray-data-analysis ncbi-geo stringdb wgcna bioinformatics-analysis bioinformatics-visualization
0
argonaut0 / ProteinScale
Browser app that generates graphs from amino acid sequences and hydrophobicity scales
reactjs biology bioinformatics bioinformatics-visualization react-vis typescript protein-sequences
Language:TypeScript
jacobwindsor / SQANTIExplorer
Inter-sample analysis of SQANTI classifications
rna-seq rna-sequencing tgs pacbio pacbio-data pacbio-iso-seq bioinformatics bioinformatics-tool bioinformatics-visualization sqanti genome-browser liftover
Language:R