binning

There are 2 repositories under binning topic.

• ShichenXie / scorecardpy

  Scorecard Development in python, 评分卡

  pythonscorecardcredit-scoringreleasewoebinningwoebinning
  Language:Python 681

• guillermo-navas-palencia / optbinning

  Optimal binning: monotonic binning with constraints. Support batch & stream optimal binning. Scorecard modelling and counterfactual explanations.

  batch-processingbinningcounterfactual-explanationscredit-scoringmdlpoptimizationpythonscorecardstreamstreaming-datawoewoebinning
  Language:Python 420

• nf-core / mag

  Assembly and binning of metagenomes

  workflownextflowmetagenomicsassemblybinningannotationnf-corepipelinebioinformaticsnanoporenanopore-sequencingmetagenomeslong-read-sequencing
  Language:Nextflow 182

• ShichenXie / scorecard

  Scorecard Development in R, 评分卡

  rscorecardcredit-scoringreleasewoebinningwoebinning
  Language:R 158

• oguzeroglu / Nearby

  Find nearby 3D objects in constant time O(1).

  game-developmentbinningalgortihmclosest3doctreespatial-hash
  Language:JavaScript 104

• metagentools / GraphBin

  ✨🧬 Refined binning of metagenomic contigs using assembly graphs

  metagenomicsbinningcontigsassembly-graphlabel-propagation
  Language:Python 81

• rhysnewell / aviary

  A hybrid assembly and MAG recovery pipeline (and more!)

  assemblybinningbioinformaticsmetagenomicsworkflow
  Language:Python 68

• seqan / raptor

  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

  minimizerk-merbinningthresholdbloom-filterfilterset-membership
  Language:C++ 51

• metagentools / MetaCoAG

  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs

  binningmetagenomicscontigsassembly-graphs
  Language:Python 42

• francescoalemanno / BayesHistogram.jl

  pure Julia package for optimal histogram binning, based on piecewise constant model.

  binningerror-propagationhistogram
  Language:Julia 40

• KwanLab / Autometa

  Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

  metagenomicsbinningtaxon-profiling
  Language:Python 39

• abeusher / timehash

  An algorithm for creating user configurable, variable-precision sliding windows of time. Useful for binning time values in large collections of data.

  timehashpythongolangperljavacbigdatabinninggeohashhashinghashing-algorithmtime-series
  Language:C# 38
• PandExo

  natashabatalha / PandExo

  A Community Tool for Transiting Exoplanet Science with the JWST & HST

  exoplanetsexoplanet-transitsjwstspectroscopybinningstscihstsimulatorastronomyastrophysics
  Language:Jupyter Notebook 32

• songweizhi / Binning_refiner

  Improving genome bins through the combination of different binning programs

  binningbinning-refinerbioinformaticsmetagenomicsrefinement
  Language:Python 30

• claczny / VizBin

  Repository of our application for human-augmented binning

  javabioinformaticsmetagenomicsbinningmachine-learningvisualisation
  Language:Java 27

• dionhaefner / bayesian-histograms

  Bayesian histograms for estimation of binary rare event rates, with fully automated bin pruning :bar_chart:

  bayesianhistogrambinningdata-miningrare-events
  Language:Jupyter Notebook 27

• metagentools / GraphBin2

  ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

  metagenomicsbinningcontigsassembly-graphsoverlapped-binning
  Language:Python 27

• Arkadiy-Garber / SprayNPray

  Rapid and simple taxonomic profiling of genome and metagenome contigs

  diamondbinningmetagenomicscontaminationendosymbiontshorizontal-gene-transferhgt
  Language:Python 26

• qiyunlab / binarena

  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs

  assemblybinningclusteringgraphicsmetagenomicsvisualization
  Language:JavaScript 26

• CAMI-challenge / AMBER

  AMBER: Assessment of Metagenome BinnERs

  binningmetagenomicsbenchmarkingbiobox
  Language:Python 25

• pirovc / metameta

  metagenomicsprofilingbinningtaxonomysnakemakepipeline
  Language:Python 23

• carstenbauer / BinningAnalysis.jl

  Statistical standard error estimation tools for correlated data

  statisticsstatistical-analysiscorrelationsmonte-carlo-simulationbinning
  Language:Julia 21

• anuradhawick / MetaBCC-LR

  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition

  metagenomicspythonc-plus-plusgenomicsbinninglong-reads
  Language:Python 19

• arpitnarechania / binguru

  BinGuru is an open-source Typescript package to bin/classify data using 18 established binning methods, including a new method, resiliency.

  binningcartographychoropleth-mapdata-binningdata-classificationgeospatial-visualizationgeovisualizationgisopen-sourcetypescript-libraryresiliencyvisualization
  Language:TypeScript 12
• rbin

  rsquaredacademy / rbin

  Tools for binning data

  rstatsbinninglogistic-regressionwoe-and-ivwoebinning
  Language:R 12

• Amshra267 / Cassandra-Udyam

  Contains our Approach for the competition organized at Udyam'21

  data-preprocessinghypothesisoutlier-removallgbmclassifierfeature-aggregationbinningoptuna
  Language:Jupyter Notebook 11

• marbl / binnacle

  Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

  binningchangepoint-detectionmetagenome-assembled-genomesmetagenome-assemblymetagenomicsscaffolding
  Language:Python 9

• DivyaKrishnani / Data-Preprocessing-with-Python

  Implementation of Data Preprocessing techniques such as handling missing values, noise smoothing, PCA, etc.

  data-miningdata-preprocessingmissing-value-handlingdispersionbinningsmoothingnormalization
  Language:Jupyter Notebook 8

• xxzcool / scoremodel

  Credit scoring modeling toolbox based on R

  rscorecardscoring-modelscredit-riskcredit-scoringwoeivkspsibinningdiscretizationrisk-management
  Language:R 8

• LeonDlugosch / MetaSeq-Toolkit

  This pipeline is intended to be a convenient way to work though large sets of metagenomic or metatranscriptiomic datasets while also retaining high analytical flexibility due to retained intermediate results that might be useful outside of the intended purpose.

  metagenomicsassemblycontigsdnabinninggene-classificationecologymicrobiome-analysismicobiomesequencingmapping
  Language:Shell 6

• ekenes / binning-experiments

  Various apps exploring client-side binning in the ArcGIS JS API.

  aggregationbinningdata-visualization
  Language:HTML 5

• erikhuizinga / honeycomb

  Tools for hexagonal binning (honeycomb plot) and visualisation.

  matlabhexagonscatter-plotscatterscatterplotdistributiondensityvisualizationbinning
  Language:MATLAB 5

• Keris / creditscoring

  Credit scoring toolkit with python

  scorecardpythonbinningmachine-learningfinance
  Language:Python 5

• QuentinLetourneur / Let-it-bin

  Optimize workflow for binning metagenomic short reads from multiple samples

  nextflowbinningmetagenomic-analysissingularity-containers
  Language:Nextflow 5

• nunofonseca / msi

  nanopore-analysis-pipelinemetabarcodingadapter-trimmingdocker-imageprimerpolishingbinning
  Language:Shell 4

• Yash22222 / MY-TP-PROJECTS

  I am Uploading My Short simple projects on Python, Java, C++ & C Language in this library.

  anovabinningcssexploratory-data-analysishtmlhtml-css-javascriptjavajavascriptjupyter-notebookpassword-generatorpythonpython-mini-projectspython-programmingpython-projectspython3wifi-password-viewer
  Language:Jupyter Notebook 4