sratoolkit

There are 0 repository under sratoolkit topic.

pysradb
saketkc / pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
bioinformatics ncbi-sra ncbi-sra-archive sratoolkit bioinformatics-pipeline sra ena
Language:Python 297
uc-bd2k / GREP2
GEO RNA-seq Experiments Processing Pipeline
rna-seq gene-expression-omnibus sratoolkit sra pipeline rna-seq-pipeline
Language:R 20
gversmee / dbgap2x
bioinformatics bioinformatics-tool bioinformatics-data bioinformatics-databases dbgap r rpackage dockerfile docker-image sratoolkit sra-files fair
Language:Jupyter Notebook 8
AnstMikh / DNA
pipeline: from sra, bed, vcf to plink
samtools bcftools plink plink2 sratoolkit angsd pipeline python r hapmap
Language:Jupyter Notebook 2
yodeng / srautils
fast utils for fetch and dump NCBI SRA archive raw data
fastq-dump ncbi-sra sra-data sratoolkit sra-toolkit
Language:Python 1
jranaraki / DecryptUsingSRAToolkit
Decrypt the encrypted genome data files using SRA Toolkit
decrypt-files genome sratoolkit
0
ZuberLab / sra-nf
Download Raw Reads from SRA Archive
bioinformatics-pipeline nextflow sratoolkit
Language:Nextflow 0
adityamahadevaniyer / RNA-seq
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
rna-seq-analysis rna-seq emase bowtie2 qtl trimmomatic sratoolkit helix
Language:HTML