secondary-structure
There are 1 repository under secondary-structure topic.
- Language:Python 121
mircare / Porter5
Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
Language:C++ 43- Language:Python 26
eternagame / EternaBrain
Deep learning to solve RNA design puzzles
Language:Python 19- Language:C++ 14
- Language:Python 11
- Language:C++ 10
MoseleyBioinformaticsLab / jpredapi
Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server
Language:Python 10nezix / CPPCartoon
Cartoon mesh generation for secondary structure of proteins in C++
Language:C++ 9taneishi / CB513_dataset
CB513 datasets for Protein Secondary Structure Prediction
Language:Python 8- Language:JavaScript 6
carushi / reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
Language:Python 4eliza-m / CrossSpeciesWorkflow
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
Language:Python 4Arty40m / nskit
RNA/DNA secondary structure library for processing it as a graph, reading and writing
Language:Python 3fryzjergda / DesiRNA
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
Language:Python 3- Language:Python 3
gkoulouras / seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
Language:Visual Basic 3- Language:R 3
- Language:Python 1
dwndnt / Protein-Secondary-Structure-Prediction-with-SVM-and-GridSearch
This GitHub repository contains a machine learning project focused on predicting the secondary structure of proteins using Support Vector Machines (SVM) as the underlying predictive model. The predictive power of SVM is further optimized through hyperparameter tuning using GridSearch.
Language:Python 1jeppeseverens / hemoPeptidesWord2Vec
Showcase of hemolytic activity prediction with Word2Vec features
JMB-Scripts / dssp-to-pymol
Assess the secondary structure in Pymol
Language:Python 1To assess the secondary structure of your protein with STRIDE in Pymol
Language:Python 1R library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server
Language:R 1MurrellGroup / AssigningSecondaryStructure.jl
Simplified DSSP algorithm implemented in Julia
Language:Julia 1- Language:Python 1
tlemmin / peptideBuilder
VMD plug-in for building a peptide ab initio from backbone torsion angles or secondary structure
Language:Rich Text Format 1YaccConstructor / YC.Bio
Tools for metagenomic assembly processing.
Language:F# 1yao-laboratory / RNAFoldAssess
Framework for benchmarking RNA secondary structure prediction algorithms.
Language:Python 1bad-ants-fleet / drforna
Interactive visualization of cotranscriptional folding
Language:JavaScript 0- Language:Python 0
matsunagalab / demo_ss_prediction
demonstration for predicting secondary structures
Language:Jupyter Notebook 0whl-usc / rna2d3d
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
Language:Python 0dfsp-spirit / ptgl-openapi
OpenAPI specification for the API of the Protein Topology Graph Library (PTLG).
- Language:Java
- Language:Perl
