Gabriele Girelli (ggirelli)

ggirelli

Geek Repo

Company:@10xGenomics

Location:Stockholm, SE

Home Page:https://ggirelli.info

Twitter:@GirelliGabriele

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Gabriele Girelli's repositories

GitHub-Actions-Planet-GitHubUniverse2021-NA

Welcome to GitHub Actions planet, which lives among the GitHub Universe and is a place with full of joys, knowledges, and activities

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oligo-melting

Software to estimate oligonucleotide duplexes melting temperature. Includes state-of-the-art monovalent (e.g., Na+) and bivalent (Mg2+) ion correction, formamide (or general denaturant) correction, and melting curve estimation.

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iFISH-probe-design

iFISH Probe Design: a Python3 package to build iFISH probes.

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python-click-autocomplete-example

Example on how to set up shell autocomplete for Python scripts.

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easy-webmention-js

A simple JavaScript library to serve Webmentions via Webmention.io

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fastx-barber

Python package to trim and extract flags from FASTA and FASTQ files.

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radiantkit

A Python3 Radial Image Analysis Toolkit

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ifpd2

ifpd2: a Python3.7+ package to build iFISH probes

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pygpseq

Python3 package to analyse GPSeq images and manage TIFF files.

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python-package-template

A Python3.8+ package template with workflows (linting and packaging), pre-commits, and issue templates.

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bioTrackBinner

Binning biological data tracks and producing RDS containing data.tables

GPSeq-RadiCal

R script for fast and streamlined Radiality Calculation from GPSeq data.

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advent-of-code-2022

My Advent of Code 2022 adventure

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cocogitto

The Conventional Commits toolbox

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configs

Config files and configuration procedures.

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deconwolf-in-situ-transcriptomics

Analysis of deconwolfed ISST data generated by Nilsson lab.

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docs-template

This is a clone of docs.opensauced.pizza

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fqdedup

Single-ended FASTQ file deduplication

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gpseq-preproc

Pre-process GPSeq sequencing data

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iFISH4U

Custom routes, pages and files for iFISH4U website.

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kmermaid

K-Mer management tools

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mud-fish

Melting, Unfolding and Denaturants in Fluorescence In Situ Hybridization (a.k.a. MUD-FISH) allows to identify optimal FISH conditions.

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protoc-gen-validate

Protocol Buffer Validation - Checkout the new `protovalidate` project

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protovalidate

Protocol Buffer Validation - New Go Beta Release!

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start-here

You should open this repo first

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