core-genome

There are 0 repository under core-genome topic.

vinuesa / get_phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
phylogenomics population-genetics phylogenomics-pipeline species-trees markers genomics pipeline phylogenetics phylogenetic-trees codon-alignment maximum-likelihood orthologues species-delimitation microbiology core-genome perl r bash clock-hypothesis recombination
Language:Perl 47
chadlaing / Panseq
Pan-genomic sequence analysis
pan-genome genome-sequencing snps accessory-genome core-genome comparative-genomics
Language:HTML 43
JJChenCharly / OrthoSLC
OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
reciprocal-blast-hits single-linkage-clustering core-genome microbe-subspecies lightweight pre-compiled independent-of-mysql bioinformatics dereplication jupyter-notebook cpp-callable-binary convenient-installation large-dataset large-scale pan-genome genomics
Language:Jupyter Notebook 5
dfornika / core-typer
A Core Genome MLST (cgMLST) Typing Tool
core-genome microbial-genomics sequence-typing
Language:Python 2
moorembioinfo / FlexCore
Extract flexible bacterial core genome alignments and compute SNP distances. Additionally, perform rarefaction-sampling analysis of alignments
alignment bacteria core-genome genomics pangenome snps
Language:Python 2
gmagannaDevelop / Genomique-Comparee
Génomique Comparée (Cours M2 AMI2B Paris-Saclay)
bidirectional-best-hits comparative-genomics computational-biology core-genome graph-algorithms python
Language:Python 0