mycobacterium-tuberculosis-complex

There are 1 repository under mycobacterium-tuberculosis-complex topic.

USDA-VS / vSNP
vSNP -- validate SNPs
snp pipeline genomics tuberculosis brucella analysis-pipeline mycobacterium-tuberculosis-complex snps whole-genome-sequencing high high-throughput-sequencing bam-files vcf phylogenetics freebayes wgs
Language:Python 19
dbespiatykh / RDscan
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
bioinformatics snakemake mycobacterium mycobacterium-tuberculosis-complex structural-variants bacterial-genome-analysis mycobacterium-tuberculosis
Language:Python 4
PathoGenOmics-Lab / mycolorsTB
R Color package for Mycobacterium tuberculosis complex
colors-palette mycobacterium-tuberculosis-complex r-package
Language:R 3
USDA-VS / vSNP3
vSNP -- validate SNPs
bam-files snps analysis-pipeline brucella freebayes genomics high-throughput-sequencing influenza mycobacterium-tuberculosis-complex phylogenetics pipeline sars-cov-2 tuberculosis vcf-files wgs whole-genome-sequencing mycobacterium-bovis mycobacterium-bovis-af2122 bwa-mem
Language:Python 2
TB-gen
dbespiatykh / TB-gen
Web-app to explore Mycobacterium tuberculosis complex
barcoding mycobacterium-tuberculosis-complex streamlit streamlit-webapp tuberculosis
Language:Python 1
dbespiatykh / tblg
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
barcoding command-line genotyping mycobacterium-tuberculosis mycobacterium-tuberculosis-complex python
Language:Python 1
kerrimalone / M.bovis-AF2122-genome-update
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
mycobacterium-bovis reference-genome genome-assembly pacbio illumina-sequencing de-novo-assembly genome-update mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122
Language:Shell 0
MaryAgopian / Variant_Barcoding_M.orygis
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
bacterial bacterial-genome-analysis bacterial-genomes bioinformatics bioinformatics-pipeline genomic-data-analysis genomic-data-science genomics genomics-visualization microbial-genomes microbiology mycobacterium-bovis mycobacterium-tuberculosis mycobacterium-tuberculosis-complex tuberculosis mycobacterium-orygis
Language:R 0
rahimrajwani / MIRU-profiler
mycobacterium-tuberculosis-complex whole-genome-sequencing epidemiology tandem-repeats
Language:Shell 0
jananiravi / psp-mtb
Phage-shock-protein (psp) system in M. tuberculosis
psp mycobacterium-tuberculosis-complex evolution stress-response computational-biology