slowkow

ggrepel

:round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.

awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

snpsea

:bar_chart: Identify cell types and pathways affected by genetic risk loci.

cellguide

🧭 Navigate single-cell RNA-seq datasets in your web browser.

allelefrequencies

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

hlabud

🐶 hlabud: HLA genotype analysis in R

pubmed-pairs

✌️ Search PubMed for each pair of terms from two lists.

saturation

:sponge: Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.

slowkow.com

Personal website.

covid-stats

New daily Covid cases and deaths in USA. Data from usafacts.org

fern

:herb: Barnsley fern

seurat

R toolkit for single cell genomics

.github

actions

GitHub Actions for the R community

airway_allergic_asthma

blog

Source code of my personal blog

cumulus

demuxEM

Demultiplexing cell/nucleus hashing data for single-cell genomics

harmony

Scalable integration of single cell RNAseq data for batch correction and meta analysis

hist_thresh

milwaukee-weather

Use Github Actions to automatically update a weather graph every day

MWNN

Multi-modal Weighted Nearest Neighbors

pegasus

pegasusio

pegasus io module for reading/writing single-cell genomics data

presto

Fast Wilcoxon and auROC

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

slowkow

symphony

Efficient and precise single-cell reference atlas mapping with Symphony

velocyto.R

RNA velocity estimation in R