vcf-format

There are 0 repository under vcf-format topic.

• edgardomortiz / vcf2phylip

  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

  vcfsnpsphylipalignmentphylogeneticsnexusbinarysnappfastaoutgroupconvert-snpsvcf-filesphylogenetic-analysisvcf-formatphylip-matrixhaploiddiploidpolyploid
  Language:Python 314

• davetang / learning_vcf_file

  Learning the Variant Call Format

  vcfvcftoolsbcftoolsvcf-formatmulti-sample-vcfvcf-filescall-variantsgatk
  Language:Perl 144

• biocpp / biocpp-io

  BioC++ Input/Output library

  biocppfastafastqfastq-formatbcfbcftoolsbiopythoncplusplus-20fasta-formatheader-onlymodern-cppseqansequence-analysisvcfvcf-formatcsvinput-outputtsvc-plus-plus
  Language:C++ 9

• endreth / jVCFparser

  A command-line parser for VCF files designed for population genetics analyses.

  allele-frequenciesallelesdiversity-analysisdiversity-measuresgeneticsgenotypeheterozygosityhomozygosityparsingpopulation-geneticspopulation-genomicsvcfvcf-filesvcf-formatvcfparser
  Language:Java 1

• M-Osky / VCFixer

  Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).

  genomicsvcfvcf-filesvcf-format
  Language:Perl 1

• pughlab / cbio_import_utils

  annotationsvcf-formatvepvcf2maf
  Language:Python 1

• bdolmo / vcf2json

  Convert an standard VCF to JSON format

  vcf-convertervcf-formatjsonvariant-call-format
  Language:Python 0

• zjwinn / KlusterCaller-to-VCF

  Modify KASP assay calls to a VCF format

  vcfvcf-filesvcf-formatclustercallerkaspmarkers
  Language:Shell 0