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Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
This directory contains material that I've used in different courses
Short read mapping and variant calling
A workflow for using SpeedSeq to align and call SVs from WGS data
Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.
Multi-class classification of drug resistance in MTB clinical isolates
Multi-class classification of drug resistance in MTB clinical isolates
Nextflow resequencing pipeline with bwa-mem and freebayes