jonas-fuchs

Jonas Fuchs's repositories

BAMdash

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks

Language:PythonGPL-3.020 2 3

varVAMP

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Language:PythonGPL-3.020 4 6

SARS-CoV-2-analyses

Collection of R scripts for SARS-CoV-2 (variant) analyses

Language:RGPL-3.012 10

virHEAT

Visualize microbial evolution at the SNP level!

Language:PythonGPL-3.010 3 1

General-NGS-visualisation-tools

Language:R1 10

viral_orf_finder

Search for open reading frames in viral genomes!

Language:Python1 10

Repository for pan-spefic primers designed for tiled full genome sequencing or qPCR of viral pathogens. Pathogens include amongst others Hepatitis E virus, Hepatitis A virus, Poliovirus and SARS-COV-2. Primers were designed with varVAMP.

1 40

bioconda-recipes

Conda recipes for the bioconda channel.

Language:ShellMIT000

covsonar_con_mut

Language:Python010

jonas-fuchs

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ncov

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varVAMP_in_silico_analysis

analyse varVAMP primer schemes

Language:PythonGPL-3.0000